BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE02RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 1588 0.0
>3x_Contig1507
Length = 11359
Score = 1588 bits (801), Expect = 0.0
Identities = 866/881 (98%), Gaps = 5/881 (0%)
Strand = Plus / Plus
Query: 47 attgttctgaatgtttcaaatgttgcaaatgtggtgaaaaaattaacgatcttaggtatg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7561 attgttctgaatgtttcaaatgttgcaaatgtggtgaaaaaattaacgatcttaggtatg 7620
Query: 107 caaagacaaagaaagggttattctgtataacttgtcatgaacgacttttagccaggaaga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7621 caaagacaaagaaagggttattctgtataacttgtcatgaacgacttttagccaggaaga 7680
Query: 167 agtaccatgaggagaagaagcgaagactaaagaaacagttgccgatcgttccatcgccca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681 agtaccatgaggagaagaagcgaagactaaagaaacagttgccgatcgttccatcgccca 7740
Query: 227 aattaccagactcctcttcttcacttgacccgcagaagatggagttcagcagcgtggaga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7741 aattaccagactcctcttcttcacttgacccgcagaagatggagttcagcagcgtggaga 7800
Query: 287 ctgcgaataatagtaatttgaactcgagcttagatccggggctcgaactcacgccagaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7801 ctgcgaataatagtaatttgaactcgagcttagatccggggctcgaactcacgccagaaa 7860
Query: 347 gcaacccttattccgtagtttcatcaattgcaccggataggtctagttcacgacctgcaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7861 gcaacccttattccgtagtttcatcaattgcaccggataggtctagttcacgacctgcaa 7920
Query: 407 ctgcagagttgttgcagcataaccaccagcatgcagataataattacagtgaggatgtaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7921 ctgcagagttgttgcagcataaccaccagcatgcagataataattacagtgaggatgtaa 7980
Query: 467 taaaccaactgaaccaatcaccctctccacctccacaaaagtccattaccgctccaatag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7981 taaaccaactgaaccaatcaccctctccacctccacaaaagtccattaccgctccaatag 8040
Query: 527 atttctcaaagaaggatgctatagttaagtcaagctcgaatagtgtcattgcacaattct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8041 atttctcaaagaaggatgctatagttaagtcaagctcgaatagtgtcattgcacaattct 8100
Query: 587 tagatgatgagtaccatgatgacgacggtaatgtatcaatttcaacacaacacaaggatt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8101 tagatgatgagtaccatgatgacgacggtaatgtatcaatttcaacacaacacaaggatt 8160
Query: 647 cacaattagataaaatcttacagaacacgttggacaattctgaggaggatactttacaga 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8161 cacaattagataaaatcttacagaacacgttggacaattctgaggaggatactttacaga 8220
Query: 707 taagctctactttcaactcatccgataacctaccatctagcctaaggcattaattcggat 766
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8221 taagctctactttcaactcatccgataacctaccatctagcctaaggca-aaattcggat 8279
Query: 767 ttcagtgtaatgataactcgggccgatttggagcaac-attgaatgatggcccagatagt 825
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8280 tccagtgtaatgataactcgggccgatttggagcaacaattgaatgatggcccagatagt 8339
Query: 826 tcaatcaataatacacctttgcattcttcagtc-aatcttcatcacatggcttgaaagtc 884
||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 8340 tcaatcaataaaacacctttgcattcttcagtcaaatctccatcacatggcttg-aagtc 8398
Query: 885 cccaaga-cggccgtattacataagcacgcttttggttatg 924
||||||| || | | |||||||| ||||||| ||| |||||
Sbjct: 8399 cccaagatcgccagaattacataggcacgctattgtttatg 8439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6155
Number of Sequences: 1807
Number of extensions: 6155
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)