BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE03RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 902 0.0
>3x_Contig1738
Length = 21411
Score = 902 bits (455), Expect = 0.0
Identities = 472/475 (99%), Gaps = 2/475 (0%)
Strand = Plus / Minus
Query: 48 taaacgattcttcttccacaatggtagtttgaaccacttctgaatttgggaagacacccc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16937 taaacgattcttcttccacaatggtagtttgaaccacttctgaatttgggaagacacccc 16878
Query: 108 atgtgacagcattggagcttttaggttgtaggttagtttcgaagtaacccgtataatcac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16877 atgtgacagcattggagcttttaggttgtaggttagtttcgaagtaacccgtataatcac 16818
Query: 168 ccaagtaataactaaactcaccgttcttgctttcaatctttggtttgagaacctgattcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16817 ccaagtaataactaaactcaccgttcttgctttcaatctttggtttgagaacctgattcc 16758
Query: 228 attcttcctttcgaacaaatatttctacaaaggccttttgatagattaaaccattggcag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16757 attcttcctttcgaacaaatatttctacaaaggccttttgatagattaaaccattggcag 16698
Query: 288 gtccccatccgaagatattatcagtactttgtgatccatttgttgcaggttgtgaggcca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16697 gtccccatccgaagatattatcagtactttgtgatccatttgttgcaggttgtgaggcca 16638
Query: 348 aggaaaggtatccacgttggttcaactctataagttcttcttgaatgaatgcggtttcag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16637 aggaaaggtatccacgttggttcaactctataagttcttcttgaatgaatgcggtttcag 16578
Query: 408 cagaaagtccaagatctgaccatggtagtgccttcattgagccctcaaagtatcgtatga 467
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 16577 cagaaagtccaagatctgaccatggtagtgccttcattgagccctcaaggtatcgtatga 16518
Query: 468 aaatgtttttgatatcctccaaagaaaccgggatgattcccaaagttcgtatgcc 522
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 16517 aaatgtttttgatatcctccaaagaaacc-ggatga-tcccaaagttcgtatgcc 16465
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,508
Number of Sequences: 1807
Number of extensions: 17508
Number of successful extensions: 258
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)