BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZE04FM1.SCF screened BAC_end
         (1259 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1031                                                         174   3e-43

>3x_Contig1031 
          Length = 5135

 Score =  174 bits (88), Expect = 3e-43
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                        
Query: 89   cttcctctgtgataatacgctctctggctttacttacgcttggaaaattttactgataaa 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 cttcctctgtgataatacgctctctggctttacttacgcttggaaaattttactgataaa 1262

                                        
Query: 149  agaaatctgttaaaggtagggtaatgag 176
            ||||||||||||||||||||||||||||
Sbjct: 1261 agaaatctgttaaaggtagggtaatgag 1234


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,964
Number of Sequences: 1807
Number of extensions: 24964
Number of successful extensions: 366
Number of sequences better than 1.0e-20: 1
length of query: 1259
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1243
effective length of database: 10,329,639
effective search space: 12839741277
effective search space used: 12839741277
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)