BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE04RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1621 1229 0.0
>3x_Contig1621
Length = 10398
Score = 1229 bits (620), Expect = 0.0
Identities = 702/727 (96%), Gaps = 2/727 (0%)
Strand = Plus / Minus
Query: 48 tggagaaactgatagagctaaccgattcctctagtctgctaaagtttttctggtatctat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5093 tggagaaactgatagagctaaccgattcctctagtctgctaaagtttttctggtatctat 5034
Query: 108 caatagcatcagaagacggatcatccaagttatcctttatagccagttttctcacggtat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5033 caatagcatcagaagacggatcatccaagttatcctttatagccagttttctcacggtat 4974
Query: 168 ttaagtttgtggccagttttgtagatataagataatggtaaaaagggtcttcgtcatctt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4973 ttaagtttgtggccagttttgtagatataagataatggtaaaaagggtcttcgtcatctt 4914
Query: 228 gaaagagcgaaaggtccctgtaataatttttgcgtagttgatcacttaatgtgtctaaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4913 gaaagagcgaaaggtccctgtaataatttttgcgtagttgatcacttaatgtgtctaaat 4854
Query: 288 ctgtcgtcatattccgtcagttaatgtcctttaacgaggcgctatccctttttatttgtg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4853 ctgtcgtcatattccgtcagttaatgtcctttaacgaggcgctatccctttttatttgtg 4794
Query: 348 attggaattgtactaagtattattttaaaggctatattacattttgttttatgtcactaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4793 attggaattgtactaagtattattttaaaggctatattacattttgttttatgtcactaa 4734
Query: 408 aatattatcccaaacctcaatcaaagaaataacagagctgtctgaatgaaagtcattcac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4733 aatattatcccaaacctcaatcaaagaaataacagagctgtctgaatgaaagtcattcac 4674
Query: 468 tctgaagcatgacccttgccaacccttancaaagcgcatgtaagatagagtggaccgagt 527
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 4673 tctgaagcatgacccttgccaacccttacaaaagcgcatgtaagaaagagtggaccgagt 4614
Query: 528 gctacttaatgtatctaccgatggtaagtataacataaggctgaacttggtttactattg 587
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4613 gctacttaatgtatctaccgatggtaagtataacataaggctgaacttggttaactattg 4554
Query: 588 ctaaatcttattgatatacaaattcatacgactctcataatatttcagaggaaactactg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4553 ctaaatcttattgatatacaaattcatacgactctcataatatttcagaggaaactactg 4494
Query: 648 gacccaataaatggggtatattttccgccacctactattaaactacaaactgtaggaatt 707
||| | |||||||| |||||| | ||||||||||| |||||||||||||||||||||
Sbjct: 4493 aaccaattaaatgggtaatatttccgcccacctactatcaaactacaaactgtaggaatt 4434
Query: 708 ccattggtggtagcgaaaaaggcgtt-aatggggatatcccaactttgggcatttttgag 766
| ||| || ||||||||| |||||| |||||| ||||||| || |||||| | |||||
Sbjct: 4433 cagttgttgttagcgaaaagggcgttaaatgggagtatcccagctctgggca-tcttgag 4375
Query: 767 cttactt 773
|||||||
Sbjct: 4374 cttactt 4368
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6004
Number of Sequences: 1807
Number of extensions: 6004
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)