BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE05FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1723 809 0.0
3x_Contig1790 394 e-109
3x_Contig1560 240 4e-63
3x_Contig1585 206 6e-53
3x_Contig1802 182 8e-46
3x_Contig1807 172 8e-43
3x_Contig1806 153 7e-37
3x_Contig1805 145 2e-34
3x_Contig1804 137 4e-32
3x_Contig1547 117 4e-26
3x_Contig1213 115 2e-25
3x_Contig1670 103 6e-22
>3x_Contig1723
Length = 15177
Score = 809 bits (408), Expect = 0.0
Identities = 408/408 (100%)
Strand = Plus / Minus
Query: 88 ccatgtatgtgtgacttgctctaaaagtcagcaagaaaccctcaggtactgcaatattag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgtatgtgtgacttgctctaaaagtcagcaagaaaccctcaggtactgcaatattag 382
Query: 148 gttagcaggtgacgcagacgttacagtttcctttggtcgatagatgtggcaactgcagat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttagcaggtgacgcagacgttacagtttcctttggtcgatagatgtggcaactgcagat 322
Query: 208 gcttttcgttcttgggaagtaacagcagctatactctcttgaccattaatgctttttttc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttttcgttcttgggaagtaacagcagctatactctcttgaccattaatgctttttttc 262
Query: 268 tcggtctactcatttctttcttgtgacaatgagaaaaagcatgaatccgaggggcctacg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcggtctactcatttctttcttgtgacaatgagaaaaagcatgaatccgaggggcctacg 202
Query: 328 ctgtcattgcagcttgtttaaaatatactctcagaatatgtacaggaaataatttttatc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtcattgcagcttgtttaaaatatactctcagaatatgtacaggaaataatttttatc 142
Query: 388 acgtactgctttgttcattgcatttgggaaattttgcagaaaagtttggtgaaatattca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 acgtactgctttgttcattgcatttgggaaattttgcagaaaagtttggtgaaatattca 82
Query: 448 aaacgacaaacgacatatatagcaaagtgattgattaaagcagcaata 495
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 aaacgacaaacgacatatatagcaaagtgattgattaaagcagcaata 34
>3x_Contig1790
Length = 27369
Score = 394 bits (199), Expect = e-109
Identities = 283/307 (92%), Gaps = 3/307 (0%)
Strand = Plus / Minus
Query: 504 tgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagta 563
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5307 tgttgggctggatattcatcatgtttggtagtagggacttggcctagagggttagtagta 5248
Query: 564 ttaacgtaattggatgccattctgacttgtagttgttaatgaaataaatggataattaaa 623
|| |||| | ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 5247 ttggtgtaaatagatgccattctgacttgtagttgttaatg-aataaatggatagttaaa 5189
Query: 624 gtggtgatcgactagttaagtaaattacttacggtgttctccttggtttcttacatcaga 683
||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct: 5188 ttggtgatcgactaattaagtaaattacttacggtgctctcctt-gtttcttacatctga 5130
Query: 684 catataagttaatgtagaacaataattagtatgtcgtcaaatccagacgg-gaaattgga 742
|||| ||||||||||||||||||||||| |||||| ||||||||||| || ||||||||
Sbjct: 5129 catacaagttaatgtagaacaataattaatatgtcatcaaatccagatggaaaaattgga 5070
Query: 743 tgaagaaaccatctactgatatacttttcagattgggcttccaatcaccaaactctgcag 802
||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||
Sbjct: 5069 tgaagaaaccatctacttatatacttttcagattgggctttcaatcaccaaacactgtag 5010
Query: 803 ccttgat 809
|||||||
Sbjct: 5009 ccttgat 5003
Score = 117 bits (59), Expect = 4e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 576 gatgccattctgacttgtagttgttaatgaaataaatggataattaaagtggtgatcgac 635
|||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 6822 gatgccattctgacttgtggttgttaatgaaataaatggataatgaaattggtgatcgac 6881
Query: 636 tagttaagtaaattactta 654
|||||| ||||| ||||||
Sbjct: 6882 tagttacgtaaactactta 6900
>3x_Contig1560
Length = 9209
Score = 240 bits (121), Expect = 4e-63
Identities = 170/185 (91%), Gaps = 1/185 (0%)
Strand = Plus / Plus
Query: 631 tcgactagttaagtaaattacttacggtgttctccttggtttcttacatcagacatataa 690
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2215 tcgactaattaagtaaattacttacggtgttctccttggtttcttacatctgacatataa 2274
Query: 691 gttaatgtagaacaataattagtatgtcgtcaaatccagacgggaa-attggatgaagaa 749
|||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 2275 cttaatgtagaacaaatattagtatgtcgtcaaatccagaggggaagataggatgaagaa 2334
Query: 750 accatctactgatatacttttcagattgggcttccaatcaccaaactctgcagccttgat 809
||| |||| | |||||||||| |||||||||||||||||| ||||| ||| |||||||||
Sbjct: 2335 accttctagttatatactttttagattgggcttccaatcatcaaacgctgtagccttgat 2394
Query: 810 cctag 814
|||||
Sbjct: 2395 cctag 2399
Score = 149 bits (75), Expect = 1e-35
Identities = 93/99 (93%)
Strand = Plus / Plus
Query: 504 tgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagta 563
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 1999 tgttggactggatattcatcatgtttggtagtaggggcttggcatagagcgttagtagta 2058
Query: 564 ttaacgtaattggatgccattctgacttgtagttgttaa 602
|| | |||| ||||||||||||||| |||||||||||||
Sbjct: 2059 ttgatgtaactggatgccattctgatttgtagttgttaa 2097
Score = 113 bits (57), Expect = 6e-25
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 503 gtgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagt 562
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 9085 gtgttggactggatattcatcatgtttggtagtaggggtttggcatagagggttagtagt 9144
Query: 563 attaacgtaattggatgccattctgacttgtagttgttaatgaaataaatgg 614
||| | || ||||||| ||| ||||| |||||| ||||| |||| ||||
Sbjct: 9145 attgattaaaatggatgctatttcgacttatagttgctaatgtaatanatgg 9196
>3x_Contig1585
Length = 11490
Score = 206 bits (104), Expect = 6e-53
Identities = 205/234 (87%), Gaps = 5/234 (2%)
Strand = Plus / Minus
Query: 639 ttaagtaaattacttacggtgttctccttggtttcttacatcagacatataagttaatgt 698
||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||
Sbjct: 1633 ttaagtaaattacttacggtgttctccttagtttcttctatctgacata--agttaatgt 1576
Query: 699 agaacaataattagtatgtcgtcaaatccagacgggaaa-ttggatgaagaaaccatcta 757
||||||||||||| | ||| | |||||||| |||||| ||||||||||||||| ||||
Sbjct: 1575 agaacaataattaatgtgtaaccgaatccagatgggaaaattggatgaagaaaccttcta 1516
Query: 758 ctgatatacttttcagattgggcttccaatcaccaaactctgcagccttgatcctagntc 817
|| |||||||||| ||||||| |||||| |||||||||||| |||||||||||||| ||
Sbjct: 1515 cttatatactttttagattggttttccaagcaccaaactctgtagccttgatcctagttc 1456
Query: 818 gtttcagcttcagcttctttatttagc-gtggttcaataactggcgccttagaa 870
| |||||||| ||||| ||||||||| |||||| ||||||||||||||||||
Sbjct: 1455 ctctcagcttcggcttc-ttatttagcattggttcgataactggcgccttagaa 1403
>3x_Contig1802
Length = 45229
Score = 182 bits (92), Expect = 8e-46
Identities = 114/120 (95%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 504 tgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagta 563
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 45091 tgttggactggatattcatcaaaaatggtagtaggggcttggcctagagggttagtagta 45150
Query: 564 ttaacgtaattggatgccattctgacttgtagttgttaatgaaataaatggataattaaa 623
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 45151 ttaacgtaattggatgccattctgacttgtagttgttaatgatataaat-gataattaaa 45209
Score = 151 bits (76), Expect = 3e-36
Identities = 115/128 (89%)
Strand = Plus / Plus
Query: 631 tcgactagttaagtaaattacttacggtgttctccttggtttcttacatcagacatataa 690
||||||| |||||| |||| |||||||||||||||| |||||||||||| |||||||||
Sbjct: 36035 tcgactaattaagttaatttcttacggtgttctcctcggtttcttacatatgacatataa 36094
Query: 691 gttaatgtagaacaataattagtatgtcgtcaaatccagacgggaaattggatgaagaaa 750
||||||| ||||||||||||| ||||||||||| ||| | ||||||||| |||||||||
Sbjct: 36095 gttaatgcagaacaataattaatatgtcgtcaattcctaatgggaaattgaatgaagaaa 36154
Query: 751 ccatctac 758
||||||||
Sbjct: 36155 ccatctac 36162
>3x_Contig1807
Length = 66587
Score = 172 bits (87), Expect = 8e-43
Identities = 153/175 (87%)
Strand = Plus / Minus
Query: 547 ctagagggttagtagtattaacgtaattggatgccattctgacttgtagttgttaatgaa 606
||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct: 8695 ctagagggttagtagtattaatgtaattggatgtcattctgacttgtagttgataatgaa 8636
Query: 607 ataaatggataattaaagtggtgatcgactagttaagtaaattacttacggtgttctcct 666
|| |||||||||||||| |||| ||||||| |||||| |||| |||| ||||||||||
Sbjct: 8635 attaatggataattaaatcggtggtcgactaattaagtgcattatttacagtgttctcct 8576
Query: 667 tggtttcttacatcagacatataagttaatgtagaacaataattagtatgtcgtc 721
||||| ||| ||| || ||||| |||||| |||||||||| || |||||||||
Sbjct: 8575 tggttccttcgatctcacgtataatttaatgcagaacaataactaatatgtcgtc 8521
>3x_Contig1806
Length = 53694
Score = 153 bits (77), Expect = 7e-37
Identities = 215/254 (84%), Gaps = 8/254 (3%)
Strand = Plus / Plus
Query: 631 tcgactagttaagtaaattacttacggtgttctccttggtttcttacatcagacatataa 690
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 41440 tcgactagttaagtaaattacttacggtgttctccttggtttcttacatctgacatataa 41499
Query: 691 gttaatgtagaacaataattagtatgtcgtcaaatccagacggg-aaattggatgaagaa 749
| ||||||||||||||| || ||||||| |||||| | ||| ||| |||||||||||
Sbjct: 41500 gccaatgtagaacaataactaatatgtcg---aatccaaatgggaaaactggatgaagaa 41556
Query: 750 accatct-actgatatacttttcagattgggcttccaatcaccaaactctgcagccttga 808
|| ||| ||| ||||||||| |||||| |||| | ||| ||||| ||| ||||| ||
Sbjct: 41557 acactctggctg-tatactttttggattggtcttcgattcatcaaacgctgtagcctcga 41615
Query: 809 tcctagntcgtttcagcttcagcttctttatttagc-gtggttcaataactggcgcctta 867
|| ||| | ||| ||||| |||| |||| |||| ||||||||||||||||||||||
Sbjct: 41616 tcatagttgcactcaacttcaacttc-ttatctagcattggttcaataactggcgcctta 41674
Query: 868 gaagtgctcctaca 881
||| ||||||||||
Sbjct: 41675 gaaatgctcctaca 41688
Score = 117 bits (59), Expect = 4e-26
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 631 tcgactagttaagtaaattacttacggtgttctccttggtttcttacatcagacatataa 690
|||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||
Sbjct: 53486 tcgactagttaagtaaattacttacggtattccccttggtttcttctatctgacatataa 53545
Query: 691 gttaatgtagaacaataattagtatgtcgtc 721
||||| |||||| |||||||| |||||||||
Sbjct: 53546 gttaacgtagaataataattaatatgtcgtc 53576
>3x_Contig1805
Length = 19369
Score = 145 bits (73), Expect = 2e-34
Identities = 110/120 (91%), Gaps = 2/120 (1%)
Strand = Plus / Plus
Query: 763 atacttttcagattgggcttccaatcaccaaactctgcagccttgatcctagntcgtttc 822
|||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||
Sbjct: 44 atacttttcagattgggcttccaatcaccaaaagctgtagccttgatcctagttcgtctc 103
Query: 823 agcttcagcttctttatttagc-gtggttcaataactggcgccttagaagtgctcctaca 881
|||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 104 agcttcagattc-ttatctagcattggttcaataactggcgccttagaagtgctcctaca 162
>3x_Contig1804
Length = 51183
Score = 137 bits (69), Expect = 4e-32
Identities = 94/101 (93%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 504 tgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagta 563
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 51084 tgttgcactggatattcatcaagtttggtagtaggggcttgacctagagggttagtagta 51143
Query: 564 ttaacgtaattggatgccattctgacttgtagttgttaatg 604
|| | |||| |||||| ||||||||||||||||||||||||
Sbjct: 51144 ttgatgtaactggatg-cattctgacttgtagttgttaatg 51183
>3x_Contig1547
Length = 9547
Score = 117 bits (59), Expect = 4e-26
Identities = 83/91 (91%)
Strand = Plus / Minus
Query: 504 tgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagta 563
||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct: 96 tgttggactggatattcataatgtttggtagtagggtattggcatagagggttagtagta 37
Query: 564 ttaacgtaattggatgccattctgacttgta 594
|||| ||||||||||| |||| ||| |||||
Sbjct: 36 ttaaagtaattggatgacattatgaattgta 6
>3x_Contig1213
Length = 3226
Score = 115 bits (58), Expect = 2e-25
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 684 catataagttaatgtagaacaataattagtatgtcgtcaaatccagacggg-aaattgga 742
||||||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||
Sbjct: 8 catataagttactgtagaacaataattaatatgtcgtcaaatccagatgggaaaattgga 67
Query: 743 tgaagaaaccatctactgatatactt 768
|||||||||||||||| ||||||||
Sbjct: 68 tgaagaaaccatctacccatatactt 93
>3x_Contig1670
Length = 9382
Score = 103 bits (52), Expect = 6e-22
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 694 aatgtagaacaataattagtatgtcgtcaaatccagacggg-aaattggatgaagaaacc 752
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1 aatgtagaacaataattagtatgtcgtcaaatccagatgggaaaattggatgaagaaacc 60
Query: 753 atctactgatatactt 768
|||||| ||| ||||
Sbjct: 61 ttctacttatagactt 76
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6037
Number of Sequences: 1807
Number of extensions: 6037
Number of successful extensions: 123
Number of sequences better than 1.0e-20: 12
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)