BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE05RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1192 1528 0.0
>3x_Contig1192
Length = 5015
Score = 1528 bits (771), Expect = 0.0
Identities = 775/777 (99%)
Strand = Plus / Minus
Query: 51 aagcttaatgactgtaccgaatttcaaccgacattgagggtaggcaatgtggaacttaat 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3310 aagcttaatgactgtaccgaatttcaaccgacattgagggtaggcaatgtggaacttaat 3251
Query: 111 ctcaaagacggggggtctggctctattgaagttgataaaccaaagagttcataccatcca 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3250 ctcaaagacggggggtctggctctattgaagttgataaaccaaagagttcataccatcca 3191
Query: 171 tttcacagctatattcaaaatgtgatggagaatgtacaaaattatgactcggatgatgac 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3190 tttcacagctatattcaaaatgtgatggagaatgtacaaaattatgactcggatgatgac 3131
Query: 231 tttgatgagaatggaaatgacgttgaacagagttttagtataagttcagattatgaattt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3130 tttgatgagaatggaaatgacgttgaacagagttttagtataagttcagattatgaattt 3071
Query: 291 gaatcctcggaggaactaataacaacaggtggtacgatcgaacagtttgatagttcaatg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3070 gaatcctcggaggaactaataacaacaggtggtacgatcgaacagtttgatagttcaatg 3011
Query: 351 aagtcgttaacaattgaagaaattcccgggaaaacaatcactgcatcacttacaacaaaa 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3010 aagtcgttaacaattgaagaaattcccgggaaaacaatcactgcatcacttacaacaaaa 2951
Query: 411 gatatatcacaaggaaattctgataatagctctggcgatgaatcatttggattctgtgag 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2950 gatatatcacaaggaaattctgataatagctctggcgatgaatcatttggattctgtgag 2891
Query: 471 gatgattttgaaggttcgataggaaaagtgtttgtttccaatattcgaatcggagctggg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2890 gatgattttgaaggttcgataggaaaagtgtttgtttccaatattcgaatcggagctggg 2831
Query: 531 actcattcttatcatgtctcatgtcatgaaatatacggagatagtgagcctagatgggta 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2830 actcattcttatcatgtctcatgtcatgaaatatacggagatagtgagcctagatgggta 2771
Query: 591 gatgatgaaatgatgaatgaaataattgccgaaatgggcttacctgaacaccgatttaga 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2770 gatgatgaaatgatgaatgaaataattgccgaaatgggcttacctgaacaccgatttaga 2711
Query: 651 gcttattacaaacatctacacaagtcattcattgaagaagaggaagagccagaggaatat 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2710 gcttattacaaacatctacacaagtcattcattgaagaagaggaagagccagaggaatat 2651
Query: 711 gctgatatcccctttgatgatgatgacagtgatgattctactgcngatcaatgcgaacct 770
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2650 gctgatatcccctttgatgatgatgacagtgatgattctactgcggatcaatgcgaacct 2591
Query: 771 ttcgccgaagatgatctcggtgaagatcttgatgatctcgngtcttacgctctaaaa 827
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2590 ttcgccgaagatgatctcggtgaagatcttgatgatctcgtgtcttacgctctaaaa 2534
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8462
Number of Sequences: 1807
Number of extensions: 8462
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)