BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE07FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig925 1273 0.0
>3x_Contig925
Length = 3823
Score = 1273 bits (642), Expect = 0.0
Identities = 743/773 (96%), Gaps = 3/773 (0%)
Strand = Plus / Plus
Query: 96 ttaaaagatttttttttcatgttgagcatagtagtctgtaagtatgtatgattaagtaag 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 ttaaaagatttttttttcatgttgagcatagtagtctgtaagtatgtatgattaagtaag 2017
Query: 156 atatgggaaggtaaaccatttttaactaattgaatggcactggctcctggtcgtgccttg 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 atatgggaaggtaaaccatttttaactaattgaatggcactggctcctggtcgtgccttg 2077
Query: 216 tttctatttacatgtttatcgtggttaagagcgagagtattagtttgcgaatttttgtag 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 tttctatttacatgtttatcgtggttaagagcgagagtattagtttgcgaatttttgtag 2137
Query: 276 gattagcgatactagtttcgggtatataatgtcactagtgttaccggaaatggttgacag 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 gattagcgatactagtttcgggtatataatgtcactagtgttaccggaaatggttgacag 2197
Query: 336 aataccttgcttcaagtaatgttccttcaatggggtcactgtcttgttgtactgttctag 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 aataccttgcttcaagtaatgttccttcaatggggtcactgtcttgttgtactgttctag 2257
Query: 396 cctcttgccaaacacctctgcagtatcgtcgggtctcttggtcaaaggttcaccggtgat 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 cctcttgccaaacacctctgcagtatcgtcgggtctcttggtcaaaggttcaccggtgat 2317
Query: 456 atcgtcctttccgtcgactttgggagggttatattgcaaattataaactcttccacttgg 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2318 atcgtcctttccgtcgactttgggagggttatattgcaaattataaactcttccacttgg 2377
Query: 516 aacgtgaacgtaacggttttcgattctctccaagatcacttcatgaggcacgtctagctc 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2378 aacgtgaacgtaacggttttcgattctctccaagatcacttcatgaggcacgtctagctc 2437
Query: 576 cacgacaaggtntaatgaggcatcgtgttccaacaatgacttgtctaacacttcagcttg 635
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2438 cacgacaaggtttaatgaggcatcgtgttccaacaatgacttgtctaacacttcagcttg 2497
Query: 636 acccacggtacgtgtgaacccatctagtaaccaagtagcatttggatttaaccagccacg 695
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2498 acccacggtacgtgggaacccatctagtaaccaagtagcatttggatttaaccagccacg 2557
Query: 696 ttgactt-aattcgtcacacacaactccggtgatcaatatatcgggttacaactggcctt 754
|||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 2558 -tgacttcaattcgtcacacacaactccggtgatcaaatcatcgggtaacaactggcctt 2616
Query: 755 tcttaatatacaatgaagcccttatacctaacggtgtgccattgttaatctggtgacgta 814
||| ||||||| | || || |||| ||||||||||||||||| | |||||| | |||||
Sbjct: 2617 tctcaatatacgaggaggcacttaaacctaacggtgtgccatgttcaatctgtttacgta 2676
Query: 815 gtaaattttcatatgaatatacccttgttggaacccaattcttttaacagttt 867
| |||| | || ||| | ||| ||||| |||| || |||||||| ||||||||
Sbjct: 2677 gcaaatctccagatg-agatagccttgatggatccgaattctttcaacagttt 2728
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5492
Number of Sequences: 1807
Number of extensions: 5492
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)