BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE07RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1152 1390 0.0
>3x_Contig1152
Length = 5366
Score = 1390 bits (701), Expect = 0.0
Identities = 745/758 (98%), Gaps = 2/758 (0%)
Strand = Plus / Minus
Query: 49 ttagttcgttgaaacttattgtgtctgttgtcctttctgtcaatatctttaaaatttctc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4601 ttagttcgttgaaacttattgtgtctgttgtcctttctgtcaatatctttaaaatttctc 4542
Query: 109 tcgccaagtcttcaagcaattttctttgcacaaccgatttaccagtttgtacaaggttca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4541 tcgccaagtcttcaagcaattttctttgcacaaccgatttaccagtttgtacaaggttca 4482
Query: 169 tatcaattttaccagttttaggatccgtagcgtaatctttgatggcagactttatcagtc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4481 tatcaattttaccagttttaggatccgtagcgtaatctttgatggcagactttatcagtc 4422
Query: 229 tcactgcttcttccacatcttcaagttcaactctttcacttaacctcatcttagcatgag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4421 tcactgcttcttccacatcttcaagttcaactctttcacttaacctcatcttagcatgag 4362
Query: 289 cttctgaaagtctaatcatactttctaactgtcttgttgttgcggtaattcttttttcat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4361 cttctgaaagtctaatcatactttctaactgtcttgttgttgcggtaattcttttttcat 4302
Query: 349 ctgatctactgtcatcacccatctttctcataccgacatatgccctcacaagttcagtct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4301 ctgatctactgtcatcacccatctttctcataccgacatatgccctcacaagttcagtct 4242
Query: 409 tggctgactcagttattaccgggtgaatgttttgttttgcatagttgatgtaggctgtca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4241 tggctgactcagttattaccgggtgaatgttttgttttgcatagttgatgtaggctgtca 4182
Query: 469 agaattcaactggtagaatatcaccttgagatacagaatccggtctgtcttccaggtata 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4181 agaattcaactggtagaatatcaccttgagatacagaatccggtctgtcttccaggtata 4122
Query: 529 aactggttaaatgcttagcgagttcacgatcagacgcttcgttgaccttgtcaagcacta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4121 aactggttaaatgcttagcgagttcacgatcagacgcttcgttgaccttgtcaagcacta 4062
Query: 589 gataaacgagatcaaatcttgataataatggnagcggcaaatcaatattttcagtcacag 648
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4061 gataaacgagatcaaatcttgataataatggaggcggcaaatcaatattttcagtcacag 4002
Query: 649 gaagattaggattgtacctagagttgataggattgccactagccagaattgaagttctag 708
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4001 gaagattaggattgtacctagagttgataggattggcactagccagaattgaagttctag 3942
Query: 709 catttaaagntggaataatacctgcttttgcaatagagaatgtttgttgttccattacct 768
||||||||| || |||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct: 3941 catttaaagttgtaataatacctgcttttgcaatagagattgtttgttgttccataactt 3882
Query: 769 catgtnatacctgaactaggatttatcgttcatcttat 806
||||| ||| |||| |||| | ||||||||||||||||
Sbjct: 3881 catgtaata-ctgatctagta-ttatcgttcatcttat 3846
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7138
Number of Sequences: 1807
Number of extensions: 7138
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)