BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE08FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1487 0.0
>3x_Contig1770
Length = 29267
Score = 1487 bits (750), Expect = 0.0
Identities = 815/829 (98%), Gaps = 6/829 (0%)
Strand = Plus / Minus
Query: 88 atcaattattatagaaagacgggagaaacagacagctccagaccaaaattacccgttggt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8035 atcaattattatagaaagacgggagaaacagacagctccagaccaaaattacccgttggt 7976
Query: 148 gagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgtcagt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7975 gagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgtcagt 7916
Query: 208 ccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaaacat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7915 ccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaaacat 7856
Query: 268 gaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaacaga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7855 gaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaacaga 7796
Query: 328 ttctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggtcgaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7795 ttctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggtcgaa 7736
Query: 388 gttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggatggtt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7735 gttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggatggtt 7676
Query: 448 gtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggctcgt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7675 gtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggctcgt 7616
Query: 508 catttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaagtat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7615 catttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaagtat 7556
Query: 568 caacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttactggat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7555 caacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttactggat 7496
Query: 628 aacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaatccatgtat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7495 aacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaatccatgtat 7436
Query: 688 tatggtcaacagttccaggaagatattgatttctacaacttcgatgaaagagctaaggag 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7435 tatggtcaacagttccaggaagatattgatttctacaacttcgatgaaagagctaaggag 7376
Query: 748 ttggaggagaacttaatattttggaatgctaccaagaatttctttgaatgctacacagaa 807
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 7375 ttggaggagaacttaatattttggaatgctaccaagaatttc-ttgaatgctacacag-a 7318
Query: 808 tgaaagcaatgatttaaatacatggaccttggtgatcctactgggttgtgggggaaggtt 867
||| |||||||||| ||||||||||||| ||||||||||||| |||||| || |||||||
Sbjct: 7317 tgagagcaatgattcaaatacatggacc-tggtgatcctact-ggttgt-ggtgaaggtt 7261
Query: 868 ttttgttttttgaaacctctntgaagggtgggttttgttaaatccggtt 916
||| |||||| |||||||| ||||||||||| ||||| ||||||||||
Sbjct: 7260 tttcgtttttgaaaacctctatgaagggtggg-tttgtaaaatccggtt 7213
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6681
Number of Sequences: 1807
Number of extensions: 6681
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)