BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE08RM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1607 890 0.0
>3x_Contig1607
Length = 10159
Score = 890 bits (449), Expect = 0.0
Identities = 509/525 (96%), Gaps = 3/525 (0%)
Strand = Plus / Minus
Query: 52 aaacgctgtgaagaacttgatgaaccaattcctcatgatgagcacttatccgatatgaac 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5005 aaacgctgtgaagaacttgatgaaccaattcctcatgatgagcacttatccgatatgaac 4946
Query: 112 cctcaattcaaatatatgtactaatacccccccccccaccttcttagtcagagtcaaaaa 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4945 cctcaattcaaatatatgtactaatacccccccccccaccttcttagtcagagtcaaaaa 4886
Query: 172 ttaaaacaaagaacttcgaacggtttccttatctgaacttacaacattgtattttattag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4885 ttaaaacaaagaacttcgaacggtttccttatctgaacttacaacattgtattttattag 4826
Query: 232 tattaggtttgtattaatgtataaattaaagattacacgactttttattgtggccttttt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825 tattaggtttgtattaatgtataaattaaagattacacgactttttattgtggccttttt 4766
Query: 292 tctagtagtacatatagtctcttctattatcaaggcattcataaatattgaatgttgtat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4765 tctagtagtacatatagtctcttctattatcaaggcattcataaatattgaatgttgtat 4706
Query: 352 catgagaattatttgccgttaacatcatccggtgtggatggaatgccatagtggaaatga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4705 catgagaattatttgccgttaacatcatccggtgtggatggaatgccatagtggaaatga 4646
Query: 412 aaggcgatgatcttgcaccagtagtcatcccactaattggtcctgaatgagaagaaccgt 471
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4645 aaggcgatgatcttgcaccagtagtcatcccactaattggtcctgaatgagaggaaccgt 4586
Query: 472 gattcttaaaagtgccgtacaaaatcttcagatgttggccataatttgatttcttttggt 531
|||||||||| ||| |||| |||||| ||||||||| ||||||||||||||| ||| ||
Sbjct: 4585 gattcttaaaggtg-cgtaacaaatctccagatgttgtccataatttgatttc-tttcgt 4528
Query: 532 ccccgttgctattatggaagccgggttcgggtacttgcttacttg 576
||| |||||||| || |||| || ||||| |||||||| ||||||
Sbjct: 4527 cccagttgctataattgaag-cgtgttcgtgtacttgcatacttg 4484
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8037
Number of Sequences: 1807
Number of extensions: 8037
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)