BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE09FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig891 1574 0.0
>3x_Contig891
Length = 5018
Score = 1574 bits (794), Expect = 0.0
Identities = 861/873 (98%), Gaps = 8/873 (0%)
Strand = Plus / Minus
Query: 88 aaattccattccaatatcccatttgctgagctatgtgatactttccaggccattgaagtt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 aaattccattccaatatcccatttgctgagctatgtgatactttccaggccattgaagtt 3565
Query: 148 acctcatctagactagcaatcactgctatctgttccaaatttctatattctgtattagaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 acctcatctagactagcaatcactgctatctgttccaaatttctatattctgtattagaa 3505
Query: 208 agggatcctgatttattagttccgattacttaccttttcatccataaattagggcccgat 267
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3504 agggatcctgaatcattagttccgtttacttaccttttcatccataaattagggcccgat 3445
Query: 268 tatgaaccgggactcgaattagggttgggtgaatcgttattgatcaagaccatcagtgag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 tatgaaccgggactcgaattagggttgggtgaatcgttattgatcaagaccatcagtgag 3385
Query: 328 gcatgtgggaagtcgatacaacagatcagaaacaagtaccgtgagattggtgatttggga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 gcatgtgggaagtcgatacaacagatcagaaacaagtaccgtgagattggtgatttggga 3325
Query: 388 gaaatcgcgatgcaagcaagaaacgtacaacctacaatgtttaaaccaaaacccttaaca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 gaaatcgcgatgcaagcaagaaacgtacaacctacaatgtttaaaccaaaacccttaaca 3265
Query: 448 gtgggggaagtattcaacaatttggtatcgattgctaaatcgaacggtaaggactctcaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 gtgggggaagtattcaacaatttggtatcgattgctaaatcgaacggtaaggactctcaa 3205
Query: 508 tctaggaaagggtcgttgatcaagaagatgttaactgcgtgcaaaggttacgaggccaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 tctaggaaagggtcgttgatcaagaagatgttaactgcgtgcaaaggttacgaggccaaa 3145
Query: 568 ttcttgatcaggtcactcgaatccaagcttagaatcggattggcagagaaaactgtcttg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3144 ttcttgatcaggtcactcgaatccaagcttagaatcggattggcagagaaaactgtcttg 3085
Query: 628 atatcagtcagtaaggcaattctaacccatgagcataacgggcaagagccgagcacggag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 atatcagtcagtaaggcaattctaacccatgagcataacgggcaagagccgagcacggag 3025
Query: 688 atggtcgaacaagcagagtcattgatccgtgatgcattctgtcaagttcccaactacgaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3024 atggtcgaacaagcagagtcattgatccgtgatgcattctgtcaagttcccaactacgaa 2965
Query: 748 atgatcatcaatgttgcgttacagtacggaatcatgaatttgaaccaacatatcanattg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2964 atgatcatcaatgttgcgttacagtacggaatcatgaatttgaaccaacatatcaaattg 2905
Query: 808 aggccggggattccccttaca-ccgatgcttgcgaaacccac-aaatcaatcagcgaggt 865
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 2904 aggccggggattccc-ttacaaccgatgcttgcgaaacccacaaaatcaatcagcgaggt 2846
Query: 866 gttggacaggttccagggcactaagtttacctgttgagtac-aatatgacggttgaaaga 924
||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 2845 gttggacaggttccagggcactaagtttacctg-tgagtacaaatatgacgg-tgaaaga 2788
Query: 925 -cacaagtgcatttgtgtaagggatggatctat 956
||||||||||||||||| ||||||||||||||
Sbjct: 2787 gcacaagtgcatttgtgt-agggatggatctat 2756
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5139
Number of Sequences: 1807
Number of extensions: 5139
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)