BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE09RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1190 1181 0.0
>3x_Contig1190
Length = 5329
Score = 1181 bits (596), Expect = 0.0
Identities = 647/662 (97%), Gaps = 2/662 (0%)
Strand = Plus / Minus
Query: 38 ttatagtgccttgcgattcaataaacgatgattccaacattcttttcaatgtaggagatt 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4718 ttatagtgccttgcgattcaataaacgatgattccaacattcttttcaatgtaggagatt 4659
Query: 98 gcatagcaacatctctattcacagtacgactatcacctgtactactgaccaacgatattt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4658 gcatagcaacatctctattcacagtacgactatcacctgtactactgaccaacgatattt 4599
Query: 158 cttccatttattctgccagagtagcttaagagtttcgacttactcctttattctgcaacg 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4598 cttccatttattctgccagagtagcttaagagtttcgacttactcctttattctgcaacg 4539
Query: 218 ttttcatttcgaagtgagttctgccaaagaggtttgcattataatattgatattaatact 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4538 ttttcatttcgaagtgagttctgccaaagaggtttgcattataatattgatattaatact 4479
Query: 278 atttattaaatgtaacctttaaataaaatgatgttaaagtagcaaatattgcagtgtaga 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4478 atttattaaatgtaacctttaaataaaatgatgttaaagtagcaaatattgcagtgtaga 4419
Query: 338 aggaaaaggctactgctgagtaccgttgagttgattagaaagttgccaagtggagctaac 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4418 aggaaaaggctactgctgagtaccgttgagttgattagaaagttgccaagtggagctaac 4359
Query: 398 agctcgtgaatagataggaagcatggatctgaacccttcgttgaattgggaacgtttgca 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4358 agctcgtgaatagataggaagcatggatctgaacccttcgttgaattgggaacgtttgca 4299
Query: 458 atcactgttttacagatcacagacattacaatctattgggcgcataccttcagcatcagg 517
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 4298 atcactgttttacagatcacagacattacaatctattgggcgcaaaccttcagcaacagg 4239
Query: 518 gttgtncgtgtatttggttgctgaaccagagaaacctttcg-ttatcattacactgatga 576
||||| |||||||||||||||||||||||||||| | |||| ||| |||||||||||||
Sbjct: 4238 gttgtccgtgtatttggttgctgaaccagagaaaaccttcgtttacaattacactgatga 4179
Query: 577 actgcaactaactctaaatcatgaggcgcttccctccgctcatctgnaaagtggttatag 636
||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||
Sbjct: 4178 actgcaactaactctaaatcatgaggcgcttccttccgctcatctgaaaagt-gttatag 4120
Query: 637 aagacgatcaattggtccgtttcatgaaagatagagttagggtttatctctcacttataa 696
||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct: 4119 aagacgatcaattggtcgttatcatgaaagatagagttagggtatatctctcacttataa 4060
Query: 697 cc 698
||
Sbjct: 4059 cc 4058
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6783
Number of Sequences: 1807
Number of extensions: 6783
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)