BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE10FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 1080 0.0
>3x_Contig1582
Length = 14087
Score = 1080 bits (545), Expect = 0.0
Identities = 581/593 (97%)
Strand = Plus / Plus
Query: 89 ctaagaaattggaggttttgatccaggtgttatccatgaagaaaatacagagaaagatga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ctaagaaattggaggttttgatccaggtgttatccatgaagaaaatacagagaaagatga 929
Query: 149 tgtcagattataaaaatcttgagaaaatgctcactcttttattgcgtgcatctcgtctcg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 tgtcagattataaaaatcttgagaaaatgctcactcttttattgcgtgcatctcgtctcg 989
Query: 209 actcttacttttttgtctcactttgtgatcaagtcatggagagtgtgtcgggcctaatca 268
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 actcttacttcttagtctcactttgtgatcaagtcatggagagtgtgtcgggcctaatca 1049
Query: 269 aaattccatctgctgtatgcctatttgacgaatctgcgattgattgcctaaaaccaaatg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 aaattccatctgctgtatgcctatttgacgaatctgcgattgattgcctaaaaccaaatg 1109
Query: 329 atgaaacaatagataaacaagttgccgttgttaaaacagctaaggataggaaacgaaagg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 atgaaacaatagataaacaagttgccgttgttaaaacagctaaggataggaaacgaaagg 1169
Query: 389 agtatttctcgcaactcgaaaccttgcatatcaatcttgttgatttccaaaggaaagacc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 agtatttctcgcaactcgaaaccttgcatatcaatcttgttgatttccaaaggaaagacc 1229
Query: 449 cacagttgcgttggatgtctatttgtcacatattgcgtatagtgcaggtcattcaaatga 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 cacagttgcgttggatgtctatttgtcacatattgcgtatagtgcaggtcattcaaatga 1289
Query: 509 atttagagattaaacctaaccaggatgtgttaattcaaagtttcgagttaacgaagacaa 568
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1290 atttagagattaaacctaaccaggaggtgttaattcaaagtttcgagttaacgaagacaa 1349
Query: 569 aacatccatctctcatatcgaattggacgggaacaatgctaaatgtttgtaacaaaaaga 628
||||||||||||||||||||||||| | || ||||||| |||||||||||||||||| ||
Sbjct: 1350 aacatccatctctcatatcgaattgtatggtaacaatgttaaatgtttgtaacaaaatga 1409
Query: 629 tttcccttgggtactattactacgatttcgattccacctatcccacagactat 681
||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||
Sbjct: 1410 tttcccttgggaactataactacgatatcgattccacctatcgcacagactat 1462
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7780
Number of Sequences: 1807
Number of extensions: 7780
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)