BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE10RM1.SCF screened BAC_end
(880 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1078 0.0
>3x_Contig1744
Length = 24119
Score = 1078 bits (544), Expect = 0.0
Identities = 574/579 (99%), Gaps = 4/579 (0%)
Strand = Plus / Minus
Query: 48 tgaatgctctgaaggatttgttcttaaatggtctgttacctgaccgcaagttaaaatact 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23982 tgaatgctctgaaggatttgttcttaaatggtctgttacctgaccgcaagttaaaatact 23923
Query: 108 tcaagaaccaaaacctttccatgctactgaataagagaactttagctattttatattttg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23922 tcaagaaccaaaacctttccatgctactgaataagagaactttagctattttatattttg 23863
Query: 168 aggattacttgaagggtctatatttcaagattttggaaatctttgagaaattatcccatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23862 aggattacttgaagggtctatatttcaagattttggaaatctttgagaaattatcccatg 23803
Query: 228 atcctatcatctatgtcagaatgcaagtgctaacacatatctttgacctgctaacagcca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23802 atcctatcatctatgtcagaatgcaagtgctaacacatatctttgacctgctaacagcca 23743
Query: 288 aaccagaacaggaattcaacttgttgaaacttggtgttaacaaattaggtgacattgata 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23742 aaccagaacaggaattcaacttgttgaaacttggtgttaacaaattaggtgacattgata 23683
Query: 348 acaaagtagcgtcaaaggcttccttcaaacttttgaaacttgaaactcaacatccaaata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23682 acaaagtagcgtcaaaggcttccttcaaacttttgaaacttgaaactcaacatccaaata 23623
Query: 408 tgaaatcaattgtggtagacgctgttgtcgatattgccataaggcctcaagctgactatc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23622 tgaaatcaattgtggtagacgctgttgtcgatattgccataaggcctcaagctgactatc 23563
Query: 468 atactacatactattccgcattgacactttaatcaaacaattttgaaacgctccgagaag 527
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 23562 atactacatactattccgcattgacac-ttaatcaaacaattttgaaacgctccgagaag 23504
Query: 528 aatctagcanatcagctaatcaagacctatttcactttattcgagaaa-tcttaatcc-a 585
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 23503 aatctagcaaatcagctaatcaagacctatttcactttattcgagaaattcttaatccaa 23444
Query: 586 actgatgctgat-acgaggaatcaaagagtgaaatcaag 623
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 23443 actgatgctgataacgaggaatcaaagagtgaaatcaag 23405
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8170
Number of Sequences: 1807
Number of extensions: 8170
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 880
length of database: 10,358,551
effective HSP length: 16
effective length of query: 864
effective length of database: 10,329,639
effective search space: 8924808096
effective search space used: 8924808096
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)