BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE11FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1066 965 0.0
3x_Contig371 398 e-111
>3x_Contig1066
Length = 4816
Score = 965 bits (487), Expect = 0.0
Identities = 509/515 (98%), Gaps = 1/515 (0%)
Strand = Plus / Minus
Query: 85 tctatatctctttttcgcagaaatggacccagagaccgcatccccattcataggacgtat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tctatatctctttttcgcagaaatggacccagagaccgcatccccattcataggacgtat 456
Query: 145 tctcggatccaccgaagtttgttcaggctgcctggccatgagtattggtttttgcttatc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tctcggatccaccgaagtttgttcaggctgcctggccatgagtattggtttttgcttatc 396
Query: 205 cgatgcatttttttc-gttgttgtcacatatccatgctcaggaatcttctcagatttcca 263
||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cgatgcaatcaactccgttgttgtcacatatccatgctcaggaatcttctcagatttcca 336
Query: 264 tttcttgaagctggattcatttcgtagtcgtttacttacaatgtcgtaataatgatattt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tttcttgaagctggattcatttcgtagtcgtttacttacaatgtcgtaataatgatattt 276
Query: 324 tgtattaaactcatcgcgatcgtatttcgcactcactactggacgcgttgcgaagggatt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgtattaaactcatcgcgatcgtatttcgcactcactactggacgcgttgcgaagggatt 216
Query: 384 acgaggaatctcgctgataccacgcgactgcgaccgtattggacgagattcgttctcatt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 acgaggaatctcgctgataccacgcgactgcgaccgtattggacgagattcgttctcatt 156
Query: 444 attcctaagttgagacccaaacccctcgcgggagtatcttcggttccctgatccattccg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 attcctaagttgagacccaaacccctcgcgggagtatcttcggttccctgatccattccg 96
Query: 504 ttggaagcccttgtacctattcccattttcttgatatgcatatcgtccggtttggtaccg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ttggaagcccttgtacctattcccattttcttgatatgcatatcgtccggtttggtaccg 36
Query: 564 atcattattcccatgaaaatgagagtactgtctat 598
|||||||||||||||||||||||||||||||||||
Sbjct: 35 atcattattcccatgaaaatgagagtactgtctat 1
>3x_Contig371
Length = 1168
Score = 398 bits (201), Expect = e-111
Identities = 255/267 (95%), Gaps = 6/267 (2%)
Strand = Plus / Plus
Query: 638 ctggaatagcaacttatgctagatgaaatactagaagtattgccaaaactgaacttatag 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggaatagcaacttatgctagatgaaatactagaagtattgccaaaactgaacttatag 60
Query: 698 atggagaagcgaataatgatacttttgattaatattcaatttcattatttaccatatttt 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atggagaagcgaataatgatacttttgattaatattcaatttcattatttaccatatttt 120
Query: 758 gtttcaatattggagaanatcgagaaaatcagaanaagatcanaaagctacatanagact 817
||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| |||||
Sbjct: 121 gtttcaatattggagaaaatcgagaaaatcagaaaaagatcaaaaagctacataaagact 180
Query: 818 gtttttaatattatgtttaaaaatggtccatggaanatgagaatganatatatggtcttt 877
||||||||||||||| ||||||||||||||||| | ||||| |||| |||||| ||| ||
Sbjct: 181 gtttttaatattatg-ttaaaaatggtccatgg-agatgag-atgagatatat-gtc-tt 235
Query: 878 ttccgggccagatgtaatacaacaagt 904
||||||||||| |||||||||||||||
Sbjct: 236 ttccgggccag-tgtaatacaacaagt 261
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5719
Number of Sequences: 1807
Number of extensions: 5719
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)