BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE12FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig662 1602 0.0
>3x_Contig662
Length = 2162
Score = 1602 bits (808), Expect = 0.0
Identities = 860/875 (98%), Gaps = 2/875 (0%)
Strand = Plus / Minus
Query: 86 cttaagaaaattgcaaccttattagaacttaagaaacaagttgataagctaacggctgaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 cttaagaaaattgcaaccttattagaacttaagaaacaagttgataagctaacggctgaa 949
Query: 146 aagcagatagtgaaatagaaccacataaatctatataaggttaagtaactgttacaggct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 aagcagatagtgaaatagaaccacataaatctatataaggttaagtaactgttacaggct 889
Query: 206 aaaaatttactttgttattaggaattcattcgagatcatagtcatgtaatcgatgtctac 265
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 aaaaatttacgtagttattaggaattcattcgagatcatagtcatgtaatcgatgtctac 829
Query: 266 ggctagaaattctgaactagaaaaagcagccgaaaggtcaaaattgttgaaagaatgttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ggctagaaattctgaactagaaaaagcagccgaaaggtcaaaattgttgaaagaatgttt 769
Query: 326 cgaaaggcaatctgtaaaacgtctttcaaaattcaagtctacaaaagtgcagtcaacaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cgaaaggcaatctgtaaaacgtctttcaaaattcaagtctacaaaagtgcagtcaacaga 709
Query: 386 ggatgagcgaagagtttcaatgtttggcaaccctgatagttcgttttgaagaaaactctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggatgagcgaagagtttcaatgtttggcaaccctgatagttcgttttgaagaaaactctt 649
Query: 446 gattttacgatgttgggaaaatccaagtgacattcttagtagattatagaaaaatctata 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gattttacgatgttgggaaaatccaagtgacattcttagtagattatagaaaaatctata 589
Query: 506 atattgacgcatgggtgctttcatttcatgcaacgtcaattgctgactgcaaaagtgtat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 atattgacgcatgggtgctttcatttcatgcaacgtcaattgctgactgcaaaagtgtat 529
Query: 566 gttggaggaaatagaataaacaagcccgataaaggattctgtgcgagcttcagaaggcct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gttggaggaaatagaataaacaagcccgataaaggattctgtgcgagcttcagaaggcct 469
Query: 626 caaaggtgatgactcgattctgtcattaagaagttcgagaaatatgacacaaacaatcag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caaaggtgatgactcgattctgtcattaagaagttcgagaaatatgacacaaacaatcag 409
Query: 686 cagaggaggaagttggatatctgggctcttcagcggaagctcggaaagtacagtactgaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cagaggaggaagttggatatctgggctcttcagcggaagctcggaaagtacagtactgaa 349
Query: 746 agttcgaatgtcatcatcgaaacatttatctttaacagctttttttcattg-ttccatta 804
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 348 agttcgaatgtcatcatcgaaacatttatctttaacagc-ttttttcattgtttccatta 290
Query: 805 gcgaaggtatattcatattattctctaaagttgacagcactcttttcacaagatataata 864
|||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 289 gcgaggttatattcatattattctctaatgttgacagcactctttcaacaagatataata 230
Query: 865 atctatcattgtccgatgggtatcctcgaagatattcccttaatgcagagntctcagttt 924
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 229 atctatcattgtccgatggtaatcctcgaagatattcccttaatgcagagttctcagttt 170
Query: 925 cctcatcattgatgtgaaaaacaaatctcaggtgt 959
|||||||||||||||||| ||| |||||||||||
Sbjct: 169 cctcatcattgatgtgaattacagatctcaggtgt 135
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7423
Number of Sequences: 1807
Number of extensions: 7423
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)