BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE12RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1291 0.0
>3x_Contig1781
Length = 20717
Score = 1291 bits (651), Expect = 0.0
Identities = 725/742 (97%), Gaps = 6/742 (0%)
Strand = Plus / Plus
Query: 46 caatcctttcagagagaagagttcatccgcctaatggactccaaggtggtggtgatggag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18066 caatcctttcagagagaagagttcatccgcctaatggactccaaggtggtggtgatggag 18125
Query: 106 aaagaggaatgaacctgtggataagaggaggaggaagtgaagacaccgaaggttccattg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18126 aaagaggaatgaacctgtggataagaggaggaggaagtgaagacaccgaaggttccattg 18185
Query: 166 tgaacttgggaggtaagaacaccgttatgatgcgtcctggagataagatcgtgatccaga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18186 tgaacttgggaggtaagaacaccgttatgatgcgtcctggagataagatcgtgatccaga 18245
Query: 226 ctccaggcggtggcggctatggatgtgcctctgagttataatcagtttagtcacatgcga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18246 ctccaggcggtggcggctatggatgtgcctctgagttataatcagtttagtcacatgcga 18305
Query: 286 ttgtcaacgatgaaccatgaatcacgaaccacaaacctatttcctgcttcttattacctg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18306 ttgtcaacgatgaaccatgaatcacgaaccacaaacctatttcctgcttcttattacctg 18365
Query: 346 ttaatactgtacctttctcaaataagactccgtcagctccttggctaaagtccgcttccc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18366 ttaatactgtacctttctcaaataagactccgtcagctccttggctaaagtccgcttccc 18425
Query: 406 tatatccttctaccctagaaaaaggcgctctgcatgcacgatgttctcgttcgagccaca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18426 tatatccttctaccctagaaaaaggcgctctgcatgcacgatgttctcgttcgagccaca 18485
Query: 466 atcttcgctttccacattgcatgatattcccgatcctgcgcatgtttctgtgtatcgtct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18486 atcttcgctttccacattgcatgatattcccgatcctgcgcatgtttctgtgtatcgtct 18545
Query: 526 cgaggccaaaagatacatccacaaaaacaccaaanaaaaaaaaaaaaaaagagagaatgc 585
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 18546 cgaggccaaaagaaacaaccacaaaaacaccaaaaaaaaaaaaaaaaaaagagagaatgc 18605
Query: 586 ctctctgcccaggcacttaattggccctcgccttctccgaggcgatccttgaagctttta 645
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 18606 ctctctgcccaggcacttaattgcccctcgccttctccgaggcgatccttgaagctttaa 18665
Query: 646 tcagggcacggcacggcacattccacagacgttttcgaatttgaatttaacacctctggc 705
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 18666 ccagggcacggcacggcacattccacag-cgttttcgaatttgaatttaacacctct-gc 18723
Query: 706 tcctc-agccacacacatacattaccaatggggaaaagaaagaaactggtcacttcttgg 764
||||| ||||||||||||||| |||||| |||||||||||||||||| |||| ||||||
Sbjct: 18724 tcctcaagccacacacataca-taccaaatgggaaaagaaagaaactgttcac-tcttgg 18781
Query: 765 gaatttaagcttggactatttt 786
||||| |||||| ||||||||
Sbjct: 18782 taattt-agcttgtactatttt 18802
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,802
Number of Sequences: 1807
Number of extensions: 14802
Number of successful extensions: 2391
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)