BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF02FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1280 848 0.0
3x_Contig974 648 0.0
>3x_Contig1280
Length = 5058
Score = 848 bits (428), Expect = 0.0
Identities = 438/440 (99%), Gaps = 1/440 (0%)
Strand = Plus / Minus
Query: 87 aacgagcttcggttagcggacggaaactcggatggaggtgacgaagaggagagtctcagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aacgagcttcggttagcggacggaaactcggatggaggtgacgaagaggagagtctcagc 391
Query: 147 cccgacaccaagtctcaaagagaggaatcttcggagaatagtgaaaatgtatcaagaagc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cccgacaccaagtctcaaagagaggaatcttcggagaatagtgaaaatgtatcaagaagc 331
Query: 207 acctccagaccacctctaaccagttccatcgtttcttctgttgaaagggaacagctcaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 acctccagaccacctctaaccagttccatcgtttcttctgttgaaagggaacagctcaaa 271
Query: 267 tcacaagtgaaggtaaagatacgattacaaccaatcggggctatccctcaaatacaacct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcacaagtgaaggtaaagatacgattacaaccaatcggggctatccctcaaatacaacct 211
Query: 327 agagtatgccaaatctcagcgcaccaacaatttttagcacttactaggtttctgtgcaag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 agagtatgccaaatctcagcgcaccaacaatttttagcacttactaggtttctgtgcaag 151
Query: 387 agattaaaacgaaagcatattcattgctacatcaacaacgcattcgcgccatcattagat 446
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 150 agattaaaacgaaagcatattcattgctacatcaacaac-cattcgcgccatcattagat 92
Query: 447 caaaacattggcgatctatggacccaattcaaagtcaacgacgaacttattgtcagctac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 caaaacattggcgatctatggacccaattcaaagtcaacgacgaacttattgtcagctac 32
Query: 507 tgcgaaacggtagcattcgg 526
||||||||| ||||||||||
Sbjct: 31 tgcgaaacgctagcattcgg 12
>3x_Contig974
Length = 4780
Score = 648 bits (327), Expect = 0.0
Identities = 423/447 (94%), Gaps = 8/447 (1%)
Strand = Plus / Plus
Query: 511 aaacggtagcattcgggtagacactgaccggttcttatcacatatttatatgaataattg 570
|||| |||||| |||| ||||||| ||||| | ||||||| | |||||||||||||||
Sbjct: 229 aaaccgtagcaggcggggagacacttaccggggcgtatcacagagttatatgaataattg 288
Query: 571 ccaagccagtattgatcacgtgatatactttttctctctc--agtttgagacacaaacaa 628
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 289 ccaagccagtattgatcacgtgatatactttttctctctctcagtttgagacacaaacaa 348
Query: 629 acaaacaaacaaaacaaggcagcgcaggtcatcaagggaaaccaaaacaaagacaggtga 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 acaaacaaacaaaacaaggcagcgcaggtcatcaagggaaaccaaaacaaagacaggtga 408
Query: 689 agatcgttacc-aactgacgttttgaactggtgacggacttgtttgtttgaagagagatc 747
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agatcgttacccaactgacgttttgaactggtgacggacttgtttgtttgaagagagatc 468
Query: 748 tgaggtacttttatagatcaacagatacctggagaagttgctattatagagtanggttgc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 469 tgaggtacttttatagatcaacagatacctggagaagttgctattatagagtagggttgc 528
Query: 808 ttgaaagaaagg-atac-aataaggatggtgg-acataaacntgatgc-agcacgatatc 863
|||||||||||| |||| |||||||||||||| |||||||| |||||| |||||||||||
Sbjct: 529 ttgaaagaaaggaatacaaataaggatggtggaacataaacttgatgcaagcacgatatc 588
Query: 864 gaagatgatccctcagatctttgatcagatgcgacgtcagactggctccaanaatttttg 923
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 589 gaagatgatccctcagatctttgatcagatgcgacgtcagactggctccaagaattttgc 648
Query: 924 cagcacaccagcttc-atatcgacaca 949
|||||||||||||| |||||||||||
Sbjct: 649 aagcacaccagcttcaatatcgacaca 675
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6170
Number of Sequences: 1807
Number of extensions: 6170
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 2
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)