BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF02RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1112 0.0
>3x_Contig1759
Length = 25622
Score = 1112 bits (561), Expect = 0.0
Identities = 612/625 (97%), Gaps = 3/625 (0%)
Strand = Plus / Plus
Query: 48 aaattgttcttttcctcgttggtcatgtttgcaattttattagcaatcgtttcca-ggtt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 14712 aaattgttcttttcctcgttggtcatgtttgcaattttattagcaatcgtttccaaggtt 14771
Query: 107 tgaattgttcttaaattggactcgatgtagaaat-atattcgtgcctttcttcttctacc 165
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 14772 tgaattgttcttaaattggactcgatgtagaaatcatattcgtgcctttcttcttctacc 14831
Query: 166 ttgaagagtgtgtcctcatattgattcttccgatgagcaatgaacccagagtcctctgac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14832 ttgaagagtgtgtcctcatattgattcttccgatgagcaatgaacccagagtcctctgac 14891
Query: 226 gcccacactggatgacccacccattcatcattcaaaacctcccagcacatttcgtctctt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14892 gcccacactggatgacccacccattcatcattcaaaacctcccagcacatttcgtctctt 14951
Query: 286 ccagagcatggcatgaaggtatcgtcttttggcaattttttataacttgggccgcatgct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14952 ccagagcatggcatgaaggtatcgtcttttggcaattttttataacttgggccgcatgct 15011
Query: 346 tcgcagaggtccaagtccaatctatgtttttcatgtactatattttcgatatgtttgggt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15012 tcgcagaggtccaagtccaatctatgtttttcatgtactatattttcgatatgtttgggt 15071
Query: 406 ttttcttggtagccaacaaaacttttgaaccaatcgaaaagttctttagagctatgcaaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15072 ttttcttggtagccaacaaaacttttgaaccaatcgaaaagttctttagagctatgcaaa 15131
Query: 466 tagaattccaccttcgagaccaattcagaggttggtagaagatcttgtgagtacaaatta 525
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 15132 tagaattccaccttcgagaccaattcagaggttgttagaagatcttgtgagtacaaatta 15191
Query: 526 agaattttcaaaaactcagcgtaaacttgcttgttttcaataaaccctttcactctttca 585
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 15192 agaattttcaaaaactcagcgtaaacttgcttgtttccaataaaccttttcactctttca 15251
Query: 586 aagaacgtcacttcatcacctaatgcaatggcaatctcaggaagttgtattggttctggt 645
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 15252 aagaacgtcacttcatcacctaatgcaatggcatcttcaggaggttgtattggttctggt 15311
Query: 646 acgaacgggtccagaacttgggtcc 670
||| |||||| || ||||||||||
Sbjct: 15312 acg-acgggtacaagacttgggtcc 15335
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6891
Number of Sequences: 1807
Number of extensions: 6891
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)