BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF03FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig707 521 e-148
3x_Contig1704 381 e-105
>3x_Contig707
Length = 1885
Score = 521 bits (263), Expect = e-148
Identities = 317/328 (96%), Gaps = 7/328 (2%)
Strand = Plus / Minus
Query: 533 tggcggccaatctttgtgccgttttcgacgctcagtgcagatcataaagagctgccagat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 tggcggccaatctttgtgccgttttcgacgctcagtgcagatcataaagagctgccagat 1826
Query: 593 tctatcttcggatcggatataataaggactttgacaccaatcaaaacattcatggatatt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 tctatcttcggatcggatataataaggactttgacaccaatcaaaacattcatggatatt 1766
Query: 653 agatttactatagactctgatactccaacacagattacctgnggtaaatctcttcagcca 712
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1765 agatttactatagactctgatactccaacacagattacctggggtaaatctcttcagcca 1706
Query: 713 ggttatcaaagcgtaatgttgtggtttgatttcctaacgaagcctncaatggatccatct 772
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1705 ggttatcaaagcgtaatgttgtggtttgatttcctaacgaagcctccaatggatccatct 1646
Query: 773 cccaaagta-ggttctgggataaaatcag--ctttatttcat-gttaactcgag-tccaa 827
||||||||| ||||||||||||||||||| |||||||||| || |||||||| |||||
Sbjct: 1645 cccaaagtagggttctgggataaaatcaggcttttatttcatggtaaactcgagttccaa 1586
Query: 828 tggcttagt-atagttc-atgcacttaa 853
||||||||| ||||||| ||||||||||
Sbjct: 1585 tggcttagtaatagttcaatgcacttaa 1558
>3x_Contig1704
Length = 14855
Score = 381 bits (192), Expect = e-105
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 87 ccggaactgaagaatatctcaatcaacagtataccagactttatgagaatttttcaactt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccggaactgaagaatatctcaatcaacagtataccagactttatgagaatttttcaactt 144
Query: 147 cttggatagcaagatatcgagttgctaaaaggaagtttcatggtgctgaatcttatgcag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 cttggatagcaagatatcgagttgctaaaaggaagtttcatggtgctgaatcttatgcag 84
Query: 207 tcaataacaccattttagactacgaattttccacgttttctgttgacaacgatgtaaatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tcaataacaccattttagactacgaattttccacgttttctgttgacaacgatgtaaatt 24
Query: 267 cactcaaaattt 278
||||||||||||
Sbjct: 23 cactcaaaattt 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5904
Number of Sequences: 1807
Number of extensions: 5904
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 2
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)