BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF03RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1582 0.0
>3x_Contig1589
Length = 10239
Score = 1582 bits (798), Expect = 0.0
Identities = 881/901 (97%), Gaps = 6/901 (0%)
Strand = Plus / Minus
Query: 48 cttggaaagtcaacttctttgaaatttcagcgatcttagcaatttcagtctctggtactt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5680 cttggaaagtcaacttctttgaaatttcagcgatcttagcaatttcagtctctggtactt 5621
Query: 108 cttcggtaaatctctggtttgcagagaatgaggtttcagtgacaaaagttggtaactgat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5620 cttcggtaaatctctggtttgcagagaatgaggtttcagtgacaaaagttggtaactgat 5561
Query: 168 ggatttcttcttcttttacttcttcacccttagctttatcttcaatgaatgtagcgtaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5560 ggatttcttcttcttttacttcttcacccttagctttatcttcaatgaatgtagcgtaaa 5501
Query: 228 cttcatttggaatggccttcacgccagtttcaagggcagtactaatggtatcagacaaca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5500 cttcatttggaatggccttcacgccagtttcaagggcagtactaatggtatcagacaaca 5441
Query: 288 cagcagcaagtaattcgatatcaggacctgctgagttccagatacgacgaatgatgctct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440 cagcagcaagtaattcgatatcaggacctgctgagttccagatacgacgaatgatgctct 5381
Query: 348 gtttgtcatcgttagttgcagcactccagaagacagcttgagtgacgaaggacaaagtac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5380 gtttgtcatcgttagttgcagcactccagaagacagcttgagtgacgaaggacaaagtac 5321
Query: 408 gacctttagtttcctctctgtcaccaattgtttcaacgtcgatcaatgtaacattgatct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5320 gacctttagtttcctctctgtcaccaattgtttcaacgtcgatcaatgtaacattgatct 5261
Query: 468 tcttttcagcaacagtggttaaaaatgcttcgttaattttcaattcatcagtgtagaact 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5260 tcttttcagcaacagtggttaaaaatgcttcgttaattttcaattcatcagtgtagaact 5201
Query: 528 tcttatcctttaaatccttatcaaccaaagagctcttcaccaatacaatgatggaacctt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5200 tcttatcctttaaatccttatcaaccaaagagctcttcaccaatacaatgatggaacctt 5141
Query: 588 cttgctttacagtggaagctacgtcataagcatttaaaatggaaatgtcttcgacaacaa 647
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5140 cttgcttcacagtggaagctacgtcataagcatttaaaatggaaatgtcttcgacaacaa 5081
Query: 648 tcacatcggcagagtcgatattagaaacaacacttttcgactttgatggatgcgaagtga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5080 tcacatcggcagagtcgatattagaaacaacacttttcgactttgatggatgcgaagtga 5021
Query: 708 actgtgcttggaaagtacctgcattcccaatgttgtcaaatttcgttctcaagg-aatat 766
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5020 actgtgcttggaaggtacctgcattcccaatgttgtcaaatttcgttctcaaggaaatat 4961
Query: 767 caacattatcgatc-atgatagaccctgtactaatctagcagccaaatccaatttattac 825
|||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 4960 caacattatcgatcaatgatagaccttgtactaatctagcagccaaatccaaattattac 4901
Query: 826 tgttgtcagtggtccaattaaatgaa-ttttggggattacttgatatcttccatttcgaa 884
||||||||||||||| | |||||||| ||||||| ||||||||||||| |||| ||||||
Sbjct: 4900 tgttgtcagtggtcc-agtaaatgaagttttgggaattacttgatatc-tccaattcgaa 4843
Query: 885 acttggnatgaaacttggaacaatttgcttaccaacctttgggggaccaaccaaattttg 944
|||||| |||||||| | ||||||||||||| || ||||| ||||||||| |||| ||||
Sbjct: 4842 acttgggatgaaactagtaacaatttgcttaacagccttt-ggggaccaaacaaagtttg 4784
Query: 945 g 945
|
Sbjct: 4783 g 4783
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8401
Number of Sequences: 1807
Number of extensions: 8401
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)