BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF04FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig958 787 0.0
>3x_Contig958
Length = 3798
Score = 787 bits (397), Expect = 0.0
Identities = 444/457 (97%), Gaps = 3/457 (0%)
Strand = Plus / Plus
Query: 456 tacagtccatattatccggagttctcttctaggcgaaagccggagcgtatactaccattg 515
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 258 tacattccatattatccggagttgtcttctaggcgaaagccggagcgtatactaccattg 317
Query: 516 ttggaaataagaacaagagataaaggtggcagagccatgaaagaggaaattgttgaaaat 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttggaaataagaacaagagataaaggtggcagagccatgaaagaggaaattgttgaaaat 377
Query: 576 tgtaaatctgataacttactttgctattctacagtcagagatgagaacacgaactccaat 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgtaaatctgataacttactttgctattctacagtcagagatgagaacacgaactccaat 437
Query: 636 gttgaaatggtagaagcattgacaatagacactaagcttaaattccccaaatataaactc 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gttgaaatggtagaagcattgacaatagacactaagcttaaattccccaaatataaactc 497
Query: 696 cttaacaaaaagtcagcacggagtgttccaccttatggtattgatgaaattaccncacta 755
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 498 cttaacaaaaagtcagcacggagtgttccaccttatggtattgatgaatttacccaacta 557
Query: 756 gagaacatannatccaactccacgtctcgtcgcggtagcacaacatctggtgtaattgat 815
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gagaacataaaatccaactccacgtctcgtcgcggtagcacaacatctggtgtaattgat 617
Query: 816 ttcttatcgggtagaaaaagcagaaagaattcatcgatcagtaacaattta-aattaccg 874
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 618 ttcttatcgggtagaaaaagcagaaagaattcatcgatcagtaacaatttagatttaccg 677
Query: 875 aaaccta-caccaaaatcag-accanctctaatttac 909
||||||| ||||||| |||| |||| |||||||||||
Sbjct: 678 aaacctaccaccaaattcagaaccaactctaatttac 714
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6885
Number of Sequences: 1807
Number of extensions: 6885
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)