BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZF04RM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1147                                                         920   0.0  

>3x_Contig1147 
          Length = 6505

 Score =  920 bits (464), Expect = 0.0
 Identities = 553/576 (96%), Gaps = 5/576 (0%)
 Strand = Plus / Minus

                                                                        
Query: 51   gcacaaactgctgtctcgatcgatgactt-atacactttcgtctcataatatagatataa 109
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1004 gcacaaactgctgtctcgatcgatgacttcatacactttcgtctcataatatagatataa 945

                                                                        
Query: 110  cttctccttttcatcttttaaatgtacataaatatattatatatacctcgatcttcaaag 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944  cttctccttttcatcttttaaatgtacataaatatattatatatacctcgatcttcaaag 885

                                                                        
Query: 170  tttattcttctcagcttcctctagtttgacagtattcgtcttctgtgatacttcttagta 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  tttattcttctcagcttcctctagtttgacagtattcgtcttctgtgatacttcttagta 825

                                                                        
Query: 230  tattttgcgtaatttctatgtcacaaaaaaaggtaaccgctctctccttgctgattaaac 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824  tattttgcgtaatttctatgtcacaaaaaaaggtaaccgctctctccttgctgattaaac 765

                                                                        
Query: 290  gttttatgtgataaaatacaggtccaattaagtggagccaatagtagatgaaactcaaaa 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  gttttatgtgataaaatacaggtccaattaagtggagccaatagtagatgaaactcaaaa 705

                                                                        
Query: 350  ggaagtatttgtactattttgagtgatacttaaaattgctacgctacaatggacccacag 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704  ggaagtatttgtactattttgagtgatacttaaaattgctacgctacaatggacccacag 645

                                                                        
Query: 410  caaccggcatccgataattctgaatggcagtttcaggtcagtcctggcgctgcttggaat 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644  caaccggcatccgataattctgaatggcagtttcaggtcagtcctggcgctgcttggaat 585

                                                                        
Query: 470  ttaaga-cacaaagcaggaagggccagaccagcagcagggatgcaatttcgttaaaagtg 528
            |||||| |||||  ||||| |||||||||  ||||||||||||||||| |||||| ||||
Sbjct: 584  ttaagagcacaagccaggaggggccagacaggcagcagggatgcaattccgttaagagtg 525

                                                                        
Query: 529  gattaactgacggatgaaaatgagccttattgggaagctc-taattattgggatcttacc 587
            ||| | ||||||||||| ||||||| | ||||||| |||| |||| || || |||||| |
Sbjct: 524  gatgagctgacggatgagaatgagcttaattgggaggctcttaataataggaatcttagc 465

                                                
Query: 588  attc-tggaaacga-accctttctgaaattttcaga 621
            |||| ||||||||| ||||||||||| |||||||||
Sbjct: 464  attcttggaaacgataccctttctgatattttcaga 429


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6568
Number of Sequences: 1807
Number of extensions: 6568
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)