BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC7ZF04RM1.SCF screened BAC_end (929 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1147 920 0.0 >3x_Contig1147 Length = 6505 Score = 920 bits (464), Expect = 0.0 Identities = 553/576 (96%), Gaps = 5/576 (0%) Strand = Plus / Minus Query: 51 gcacaaactgctgtctcgatcgatgactt-atacactttcgtctcataatatagatataa 109 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1004 gcacaaactgctgtctcgatcgatgacttcatacactttcgtctcataatatagatataa 945 Query: 110 cttctccttttcatcttttaaatgtacataaatatattatatatacctcgatcttcaaag 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 944 cttctccttttcatcttttaaatgtacataaatatattatatatacctcgatcttcaaag 885 Query: 170 tttattcttctcagcttcctctagtttgacagtattcgtcttctgtgatacttcttagta 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 884 tttattcttctcagcttcctctagtttgacagtattcgtcttctgtgatacttcttagta 825 Query: 230 tattttgcgtaatttctatgtcacaaaaaaaggtaaccgctctctccttgctgattaaac 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 824 tattttgcgtaatttctatgtcacaaaaaaaggtaaccgctctctccttgctgattaaac 765 Query: 290 gttttatgtgataaaatacaggtccaattaagtggagccaatagtagatgaaactcaaaa 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 764 gttttatgtgataaaatacaggtccaattaagtggagccaatagtagatgaaactcaaaa 705 Query: 350 ggaagtatttgtactattttgagtgatacttaaaattgctacgctacaatggacccacag 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 704 ggaagtatttgtactattttgagtgatacttaaaattgctacgctacaatggacccacag 645 Query: 410 caaccggcatccgataattctgaatggcagtttcaggtcagtcctggcgctgcttggaat 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 644 caaccggcatccgataattctgaatggcagtttcaggtcagtcctggcgctgcttggaat 585 Query: 470 ttaaga-cacaaagcaggaagggccagaccagcagcagggatgcaatttcgttaaaagtg 528 |||||| ||||| ||||| ||||||||| ||||||||||||||||| |||||| |||| Sbjct: 584 ttaagagcacaagccaggaggggccagacaggcagcagggatgcaattccgttaagagtg 525 Query: 529 gattaactgacggatgaaaatgagccttattgggaagctc-taattattgggatcttacc 587 ||| | ||||||||||| ||||||| | ||||||| |||| |||| || || |||||| | Sbjct: 524 gatgagctgacggatgagaatgagcttaattgggaggctcttaataataggaatcttagc 465 Query: 588 attc-tggaaacga-accctttctgaaattttcaga 621 |||| ||||||||| ||||||||||| ||||||||| Sbjct: 464 attcttggaaacgataccctttctgatattttcaga 429 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6568 Number of Sequences: 1807 Number of extensions: 6568 Number of successful extensions: 44 Number of sequences better than 1.0e-20: 1 length of query: 929 length of database: 10,358,551 effective HSP length: 16 effective length of query: 913 effective length of database: 10,329,639 effective search space: 9430960407 effective search space used: 9430960407 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)