BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF05FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1594 0.0
>3x_Contig1785
Length = 37935
Score = 1594 bits (804), Expect = 0.0
Identities = 861/875 (98%), Gaps = 5/875 (0%)
Strand = Plus / Plus
Query: 86 tgtaattaacgtacaaaactacattttctgaaagcgtggggaaacaatagagaacatatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9496 tgtaattaacgtacaaaactacattttctgaaagcgtggggaaacaatagagaacatatt 9555
Query: 146 gcattaagaggccggaataaaaggtttagtacggagattaacatgtgcatagaggatttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9556 gcattaagaggccggaataaaaggtttagtacggagattaacatgtgcatagaggatttt 9615
Query: 206 cgttctaacttttaaacgatggaacatagatcaagtaacatagtaattggacctcataac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9616 cgttctaacttttaaacgatggaacatagatcaagtaacatagtaattggacctcataac 9675
Query: 266 ttgacaacagggataaactatattacttgatatcacttgtcgcacatggattcaacaatc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9676 ttgacaacagggataaactatattacttgatatcacttgtcgcacatggattcaacaatc 9735
Query: 326 ggtctctgatagattaagggttgcgtctttgtctgtattcgaaaacgaattaaatgtagt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9736 ggtctctgatagattaagggttgcgtctttgtctgtattcgaaaacgaattaaatgtagt 9795
Query: 386 tataggtaaatagttagttatatctagagaaatactcgtacatccatagtcaggccatcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9796 tataggtaaatagttagttatatctagagaaatactcgtacatccatagtcaggccatcc 9855
Query: 446 accaaaatagtttcttttcagttttttttgtttttccgctttgcatttaaatgccaattg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9856 accaaaatagtttcttttcagttttttttgtttttccgctttgcatttaaatgccaattg 9915
Query: 506 aaccattgaaaagggatgtcttaaaggaaatgaaagaaaggggagccttaaccaccttga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9916 aaccattgaaaagggatgtcttaaaggaaatgaaagaaaggggagccttaaccaccttga 9975
Query: 566 atgaagaattgtgaaagtttcagatacaattgttacaattgttcaaggccaacctatcaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9976 atgaagaattgtgaaagtttcagatacaattgttacaattgttcaaggccaacctatcaa 10035
Query: 626 atataatagcagttaattgattgactattttaacttgaaaggaagctatatatattttta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10036 atataatagcagttaattgattgactattttaacttgaaaggaagctatatatattttta 10095
Query: 686 agggccttgncagcggttttttagactaagaataagaaaagataagccaagatgggttcc 745
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10096 agggccttgcaagcggttttttagactaagaataagaaaagataagccaagatgggttcc 10155
Query: 746 ggtactgctagaagacctagcttgagcacttncacatncaatgacatgatggttgacgag 805
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 10156 ggtactgctagaagacctagcttgagcacttccacatccaatgacatgatggttgacgag 10215
Query: 806 cctcatggtgtgcctcgtctttcccgtcgtttgactgggtttttg-ctcaggaaaattag 864
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 10216 cctcatggtgtgcctcgtctttcccgtcgtttgactgggtttttgcctcaggaaattaag 10275
Query: 865 agtatt-atactatgattccttngcagagtagagaaattt-gaaaaaacatggggttaag 922
|||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 10276 agtattaatactatgattcctttgcagagtagagaaatttggaaaaaacatggggttaag 10335
Query: 923 aagtttg-aaccccanaccaattt-agtccaaatt 955
||||||| ||||||| || ||||| ||||||||||
Sbjct: 10336 aagtttgaaaccccagacgaatttcagtccaaatt 10370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7254
Number of Sequences: 1807
Number of extensions: 7254
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)