BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF06FM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig275 1156 0.0
>3x_Contig275
Length = 1611
Score = 1156 bits (583), Expect = 0.0
Identities = 665/685 (97%), Gaps = 7/685 (1%)
Strand = Plus / Plus
Query: 201 ggtacttgcaatgataatgagttactgcaactaccatttgatctcttgcaggaagaaggt 260
|||| ||| ||||||||||||||| || || || |||||||||||||||||||||||||
Sbjct: 411 ggtaattgaaatgataatgagttaatgaaaataaaatttgatctcttgcaggaagaaggt 470
Query: 261 ttattgttcttgtgggtaaccggccgtgctatcgaagtagggaaagaatcattgcagaat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttattgttcttgtgggtaaccggccgtgctatcgaagtagggaaagaatcattgcagaat 530
Query: 321 tggggttacgaagtaataaatgaaatatcttggatcaagacaaaccaattaggaagaaca 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tggggttacgaagtaataaatgaaatatcttggatcaagacaaaccaattaggaagaaca 590
Query: 381 attgtgacaggtagaactggccattggttgaaccaaagtaaagagcatttactcgtcggg 440
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 591 attgtgacaggtagaactggccattggttgaaccacagtaaagagcatttactcgtcggg 650
Query: 441 gtcaaaggcaatccggaatggctaaacagaaaaatagacattgacttgatcattagcgca 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gtcaaaggcaatccggaatggctaaacagaaaaatagacattgacttgatcattagcgca 710
Query: 501 actagagaaaccagtagaaagccggacgaattgtatggaatcattgaaagacttgtcggt 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 actagagaaaccagtagaaagccggacgaattgtatggaatcattgaaagacttgtcggt 770
Query: 561 acacatgcccgtaaacttgaaattttcggtagggaccataacatccgtcctggatggttc 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 acacatgcccgtaaacttgaaattttcggtagggaccataacatccgtcctggatggttc 830
Query: 621 acgataggaaatcaagtgataggctcatctatccatgaagtggatgtgaaaaggaaatac 680
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 acgataggaaatcaagtgacaggctcatctatccatgaagtggatgtgaaaaggaaatac 890
Query: 681 gaaagattcatggaaaaatcaaagaattcaaatacanactaaagatgtaatactctcttt 740
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 891 gaaagattcatggaaaaatcaaagaattcaaagacaaactaaagatgtaatactctcttt 950
Query: 741 acttcaaatgtcctaacttttatttgtcgatacacagtatccattaggagtctgtatgtg 800
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 acttcaaatgtcctagcttttatttgtcgatacacagtatccattaggagtctgtatgtg 1010
Query: 801 ttcctttcttacttttcttctttttttttaaattaatgtcatacgccctttgtaatttac 860
|||| ||||||||||||||||||||||| |||| ||||||||||||| |||||| ||||
Sbjct: 1011 ttcc-ttcttacttttcttctttttttt--aatttatgtcatacgccc-ttgtaa-ttac 1065
Query: 861 aaacgtttacattaacccacaagtt 885
||||| ||||||| |||||||||||
Sbjct: 1066 aaacg-ttacatt-acccacaagtt 1088
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8159
Number of Sequences: 1807
Number of extensions: 8159
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)