BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF06RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1581 1374 0.0
>3x_Contig1581
Length = 11429
Score = 1374 bits (693), Expect = 0.0
Identities = 793/816 (97%), Gaps = 10/816 (1%)
Strand = Plus / Minus
Query: 48 cgatgtgaaaaactcgggaaaactacagcattattatgagaatgactatgcatcgaaatt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10975 cgatgtgaaaaactcgggaaaactacagcattattatgagaatgactatgcatcgaaatt 10916
Query: 108 acttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10915 acttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcaca 10856
Query: 168 aaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaacctgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10855 aaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaacctgt 10796
Query: 228 acatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttata 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10795 acatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttata 10736
Query: 288 aaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10735 aaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcca 10676
Query: 348 ggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaaca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10675 ggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaaca 10616
Query: 408 agtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgctaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10615 agtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgctaa 10556
Query: 468 tgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaattac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10555 tgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaattac 10496
Query: 528 atagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaataggaac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10495 atagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaataggaac 10436
Query: 588 tgctactaaagtaccaaatgcgacaacanagtacattgtagaatatcttcttncgaattc 647
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 10435 tgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttcttccgaattc 10376
Query: 648 ttcagtctttgagatttgtccacagcagacaagtaagatactgaagatactttcggaaga 707
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 10375 ttcagtctttgagatttgtccacagcagacaggtaagatactgaagatacttccggaaga 10316
Query: 708 anatncataaatggcactgaatgcgaat-acaccgctctggtagtggcaaaag--tacca 764
| || ||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 10315 aaatccataaatggcactgaatgcgaataacaccgctctggtagtggcaaaaggtaacca 10256
Query: 765 catcacaaaa-tta-tatgcccag-aacactagcgtattcattgc-acgttaaa-ctttc 819
|||||||||| ||| |||||| || |||||||||||| ||||||| |||||||| ||| |
Sbjct: 10255 catcacaaaagttattatgccaagaaacactagcgtaatcattgcaacgttaaaccttcc 10196
Query: 820 gaagat-tcactggag-attctggtaaccatttccc 853
|||||| |||||| || || ||||||||||| ||||
Sbjct: 10195 gaagatatcactgaagaatcctggtaaccatctccc 10160
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6463
Number of Sequences: 1807
Number of extensions: 6463
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)