BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF07FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1725 1090 0.0
3x_Contig1560 470 e-132
>3x_Contig1725
Length = 17473
Score = 1090 bits (550), Expect = 0.0
Identities = 581/589 (98%), Gaps = 2/589 (0%)
Strand = Plus / Plus
Query: 312 cgttgttgatatggttgctgtccctagtgaagtagcacaactggatattttttcaaactc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 cgttgttgatatggttgctgtccctagtgaagtagcacaactggatattttttcaaactc 77
Query: 372 cactggtgctcctacacgcaaagaggcgctcaatacgtctgttcccttcgtttcgacaca 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 cactggtgctcctacacgcaaagaggcgctcaatacgtctgttcccttcgtttcgacaca 137
Query: 432 tactatcggaattttgtcagctaaattataccgttgcaaacccaaaatcaacccgttata 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tactatcggaattttgtcagctaaattataccgttgcaaacccaaaatcaacccgttata 197
Query: 492 tagacctccgcctccaaaactgcaaacaatacctttaattttggttataggtatttttga 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tagacctccgcctccaaaactgcaaacaatacctttaattttggttataggtatttttga 257
Query: 552 actagccaagacatccatgatttcatccaccataaaggaatggccttcccaaattagcgg 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 actagccaagacatccatgatttcatccaccataaaggaatggccttcccaaattagcgg 317
Query: 612 attatcgaaaggatggctgtaaattggctcgtatttaaaggaatcaagtttcttcataag 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attatcgaaaggatggctgtaaattggctcgtatttaaaggaatcaagtttcttcataag 377
Query: 672 gtgctccttcatgaaagaatctgcctctttccaatggttaccatgaacaacaacatctgc 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtgctccttcatgaaagaatctgcctctttccaatggttaccatgaacaacaacatctgc 437
Query: 732 gccgtaggagcgaatcttttctatattntttggacgtgttgcattcgacacaactactgt 791
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 438 gccgtaggagcgaatcttttctataattcttggacgtgttgcattcgacacaactactgt 497
Query: 792 acagggaacgttcaattcgagggacgcaaccgccggcgccaatccagcgttaccgccaga 851
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 498 acagggaacgttcaattcgagggacgcaaccgccgccgccaatccagcgttaccgccaga 557
Query: 852 gctagcaaacacttgaccgatatttttaaggcgagga-ttctttatttc 899
|||||||||||| |||||||| ||||| ||||||||| |||||||||||
Sbjct: 558 gctagcaaacacgtgaccgat-tttttcaggcgaggatttctttatttc 605
>3x_Contig1560
Length = 9209
Score = 470 bits (237), Expect = e-132
Identities = 244/245 (99%), Gaps = 1/245 (0%)
Strand = Plus / Minus
Query: 86 tagatgacccaccacaaccgatcaagatgacataatcatcatctttaatgtctgaaccga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagatgacccaccacaaccgatcaagatgacataatcatcatctttaatgtctgaaccga 186
Query: 146 gaatattttgtagtttatcgatattatacccgaagtataacgttgccccacacccaggtt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaatattttgtagtttatcgatattatacccgaagtataacgttgccccacacccaggtt 126
Query: 206 ccgcaactatgttggtatcgttagaaaattgaaggcaagttgaaatcacttcagtatcag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ccgcaactatgttggtatcgttagaaaattgaaggcaagttgaaatcacttcagtatcag 66
Query: 266 agatgacagctgacttgcttccgtgacgtttcacatttt-ggtaagccgttgttgatatg 324
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 65 agatgacagctgacttgcttccgtgacgtttcacattttgggtaagccgttgttgatatg 6
Query: 325 gttgc 329
|||||
Sbjct: 5 gttgc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5615
Number of Sequences: 1807
Number of extensions: 5615
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 2
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)