BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF07RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1015 0.0
>3x_Contig1778
Length = 27694
Score = 1015 bits (512), Expect = 0.0
Identities = 609/630 (96%), Gaps = 9/630 (1%)
Strand = Plus / Plus
Query: 48 tgaaaagagtaaggttcttttcac-attatgggcttattcatcttatgctacatcctcag 106
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 16670 tgaaaagagtaaggttcttttcaccattatgggcttattcatcttatgctacatcctcag 16729
Query: 107 acccatggtggaccagcgcaagttgaaagtgaaatggttggtcaaagaccttgatattac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16730 acccatggtggaccagcgcaagttgaaagtgaaatggttggtcaaagaccttgatattac 16789
Query: 167 atctatttgaatacatgtataattctaaaatatctgaaagttgcatttgcatcgcatttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16790 atctatttgaatacatgtataattctaaaatatctgaaagttgcatttgcatcgcatttt 16849
Query: 227 atatgtatttaatcttttgtttgtcaccttcaaaagttaaaggcagaccctattttcaat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16850 atatgtatttaatcttttgtttgtcaccttcaaaagttaaaggcagaccctattttcaat 16909
Query: 287 taatctttttattgaatggctaatctcacatattatttttatatctaaatagaaaagtga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16910 taatctttttattgaatggctaatctcacatattatttttatatctaaatagaaaagtga 16969
Query: 347 atgtacttcttgatccaattataacaatagatcagtcttgggttgggaaagaagccatga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16970 atgtacttcttgatccaattataacaatagatcagtcttgggttgggaaagaagccatga 17029
Query: 407 gcttcgattttctaaaagttctacatcaaatagatcactataattgactaaactttcgaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17030 gcttcgattttctaaaagttctacatcaaatagatcactataattgactaaactttcgaa 17089
Query: 467 atgaagttcactactggcctttctgntttattggtctttgnattgcaaggttttgcagaa 526
||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||
Sbjct: 17090 atgaagttcactactggcctttctgttttattgttctttgtattgcaagtttttgcagaa 17149
Query: 527 aaagtgaccgatttagttgttggagtga-caaagagcctgttgattgttagatcaa-gca 584
|| ||||||| |||||||||||||||| ||| ||||||||||||||| ||||||| |||
Sbjct: 17150 aagttgaccgaattagttgttggagtgaccaaggagcctgttgattgtaagatcaaggca 17209
Query: 585 tctaa-ggtgatgttgtctctgtgcact-cactggttaattga-ggact-ttgtgaga-t 639
||||| |||||||||||||||||||||| ||||||| |||||| ||||| | |||||| |
Sbjct: 17210 tctaagggtgatgttgtctctgtgcactacactggtaaattgagggactctggtgagatt 17269
Query: 640 tttgactcatcggat-ataggggagtacca 668
|||||||||||| || ||||||||||||||
Sbjct: 17270 tttgactcatcgtataataggggagtacca 17299
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8943
Number of Sequences: 1807
Number of extensions: 8943
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)