BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF08FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1376 0.0
>3x_Contig1786
Length = 33838
Score = 1376 bits (694), Expect = 0.0
Identities = 805/837 (96%), Gaps = 4/837 (0%)
Strand = Plus / Minus
Query: 88 atcattgtttttacccccaaagctcatcatacaggagaactaaaaaatatctccttcatc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11854 atcattgtttttacccccaaagctcatcatacaggagaactaaaaaatatctccttcatc 11795
Query: 148 agccagcttatgatcgcgcctttgtttccaatattcaccgttgaacttccagtaatcaca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11794 agccagcttatgatcgcgcctttgtttccaatattcaccgttgaacttccagtaatcaca 11735
Query: 208 tttagtcacaggatgaatttcctttttgaaccatctttgttggtaagtgatgtttttctc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11734 tttagtcacaggatgaatttcctttttgaaccatctttgttggtaagtgatgtttttctc 11675
Query: 268 ctctctcttctttctgacgcttctttgcctttcttcaacacgatgtttttcggtagctgc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11674 ctctctcttctttctgacgcttctttgcctttcttcaacacgatgtttttcggtagctgc 11615
Query: 328 ttcatcatatctaccttcttccatggccctttgatcaggtcttaatctggtatcagtcgg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11614 ttcatcatatctaccttcttccatggccctttgatcaggtcttaatctggtatcagtcgg 11555
Query: 388 aggtagccatggcaatagatgtggttgaggagcattcaatgtcactgcaaactttgtcaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11554 aggtagccatggcaatagatgtggttgaggagcattcaatgtcactgcaaactttgtcaa 11495
Query: 448 attgaatgggaattctggtctttcattaacatgccatacgttaaatctagtaccatcata 507
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 11494 attgaatgggaattctggtctttcattaacatgccatacgttaaatctagtagcataata 11435
Query: 508 tttagggccaactgaattaccgctgcttgtgtgagttacgctatgtttcaactcgtctac 567
||||||||||| |||||||||| || |||||||||||| |||||||||||| | ||||||
Sbjct: 11434 tttagggccaaatgaattaccgatgtttgtgtgagttatgctatgtttcaattggtctac 11375
Query: 568 ttgcatctcttccaaagaattaggtttcaaaactttcttcgcagatactgactcgttcca 627
|||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 11374 ttgcatatctttcaaagaattaggtttcaaaactttcttggcagatactgattcgttcca 11315
Query: 628 gcggccaccaaagatccattccttaccacctttggcattatagacttcacccttgacttc 687
||||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||||||
Sbjct: 11314 gcggccaccaaagattcatttcttaccacgtttggcattatagacttcagccttgacttc 11255
Query: 688 ataagcactacttgatctccatcctctggccttaaagtggatcatacagtaatcgcctgt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 11254 ataagcactacttgatctccatcctctggccttaaagtggatcatacagtaatggcttgt 11195
Query: 748 gttgtgattgacaattntcacatctccgtaattatcaacttgaggatttcctaaaaggat 807
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11194 gttgtgattgacaattttcacatctccgtaattatcaacttgaggatttcctaaaaggat 11135
Query: 808 accccacacttgattgtttggctttttgtaagtgtacaactcttctttaccattgaaatc 867
|||| | |||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct: 11134 acccacaatttgattgtttggatttttgtaagtgtacaactcttatttaccatttgaatc 11075
Query: 868 -ggtctgatcgttagata-cataga-ccaaatgtttgaaatcaaa-gatctaccatt 920
||||||||||||||||| |||||| ||||||||||||||| ||| |||||||||||
Sbjct: 11074 gggtctgatcgttagataccatagacccaaatgtttgaaataaaaggatctaccatt 11018
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6620
Number of Sequences: 1807
Number of extensions: 6620
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)