BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF09RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 1402 0.0
>3x_Contig1577
Length = 10627
Score = 1402 bits (707), Expect = 0.0
Identities = 775/791 (97%), Gaps = 6/791 (0%)
Strand = Plus / Minus
Query: 49 atatgatatttttattcaacaatttatatatgaacagtatatgcgatattttgagtagtt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6009 atatgatatttttattcaacaatttatatatgaacagtatatgcgatattttgagtagtt 5950
Query: 109 tatgttttattttttctttcgaagtatgtatggaagggacactagcaaatggttgttgac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5949 tatgttttattttttctttcgaagtatgtatggaagggacactagcaaatggttgttgac 5890
Query: 169 ttctttcttttgttcgaaattatggtacgagagcgagtcagccagagattccatggagtc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5889 ttctttcttttgttcgaaattatggtacgagagcgagtcagccagagattccatggagtc 5830
Query: 229 ttctgggactgagtcctccaaaacttttgtcaataataccaactcttttctttcaatttg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5829 ttctgggactgagtcctccaaaacttttgtcaataataccaactcttttctttcaatttg 5770
Query: 289 catttcagtattgaaacgttccttgctgctctttatcttgtcgtacaacaactgcttttg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5769 catttcagtattgaaacgttccttgctgctctttatcttgtcgtacaacaactgcttttg 5710
Query: 349 ctcgtcagtgactttttctttccaaacctttttacatgatttacacatctcttggtacct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5709 ctcgtcagtgactttttctttccaaacctttttacatgatttacacatctcttggtacct 5650
Query: 409 gaggtgtgcgttaagcatagaatccatttttgtctgtgaatgagatattattttcataag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5649 gaggtgtgcgttaagcatagaatccatttttgtctgtgaatgagatattattttcataag 5590
Query: 469 tggagtatgtctttccaagtacgtgggacggtgcattggagcttcttcttgttttatgta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5589 tggagtatgtctttccaagtacgtgggacggtgcattggagcttcttcttgttttatgta 5530
Query: 529 cctctgttcccaaattagattaaactgtagtttatattttgagcgaaacaaaagatatgc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5529 cctctgttcccaaattagattaaactgtagtttatattttgagcgaaacaaaagatatgc 5470
Query: 589 acttgaaataggacacgatattgcaaggtaccttgccagttcttcgtttcctaattttct 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5469 acttgaaataggacacgatattgcaaggtaccttgccagttcttcgtttcctaattttct 5410
Query: 649 gaaatcgatcttattgaatttgaagaatcacgcatgataaacccttcttttcgtgattga 708
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5409 gaaatcgatcttattgaatttgaagaacaacgcatgataaacccttcttttcgtgattga 5350
Query: 709 taatgatttcccattctgcccttattcgcctcaacaaaagaatatgactnctatgatctn 768
|||||| |||||||||||||||||||||||||| |||| |||||||||| |||||||||
Sbjct: 5349 taatga-ttcccattctgcccttattcgcctcaccaaaggaatatgactcctatgatctt 5291
Query: 769 tnnatatcagcaat-atatt-agcctgtcga-ttgcagctgtaaat-atatttggataca 824
| | ||||||||| ||||| |||||||||| |||||||||||||| ||||| | |||||
Sbjct: 5290 tata-atcagcaataatattaagcctgtcgatttgcagctgtaaataatattggaataca 5232
Query: 825 tctagtggtct 835
|||||||||||
Sbjct: 5231 tctagtggtct 5221
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8937
Number of Sequences: 1807
Number of extensions: 8937
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)