BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF10FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1684 1538 0.0
>3x_Contig1684
Length = 14609
Score = 1538 bits (776), Expect = 0.0
Identities = 809/816 (99%), Gaps = 3/816 (0%)
Strand = Plus / Minus
Query: 82 cacggattgggagcaaagtcatgttagtggagcattatcggctgaacagatagatgaaag 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13053 cacggattgggagcaaagtcatgttagtggagcattatcggctgaacagatagatgaaag 12994
Query: 142 gcacaagaagatagcactcgaagaagagaaagaaaagaaagacttgatagaaaaagaatt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12993 gcacaagaagatagcactcgaagaagagaaagaaaagaaagacttgatagaaaaagaatt 12934
Query: 202 gcaggcggcaaaggaaagaatcaaagaggaaaaagatgctaaaagaggtcccggaatgaa 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12933 gcaggcggcaaaggaaagaatcaaagaggaaaaagatgctaaaagaggtcccggaatgaa 12874
Query: 262 acttggcgccgcatcctctaacgttcaaataaatttgaactctttaactgatgatcaacg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12873 acttggcgccgcatcctctaacgttcaaataaatttgaactctttaactgatgatcaacg 12814
Query: 322 gatgagattgatgagagagcagcgagctcgtgcagctgaagcgagaatgaaaagattttc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12813 gatgagattgatgagagagcagcgagctcgtgcagctgaagcgagaatgaaaagattttc 12754
Query: 382 tggtaactagatgcaagtataaatagtaacatatataacttttacacggagtcttttacc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12753 tggtaactagatgcaagtataaatagtaacatatataacttttacacggagtcttttacc 12694
Query: 442 aaagcataagtgatgtactgtcgtgcatcatcaaagacgttattcatagcttcgtcaatt 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12693 aaagcataagtgatgtactgtcgtgcatcatcaaagacgttattcatagcttcgtcaatt 12634
Query: 502 aagtcattagtcttttgtggatcaatatgtttgtatcccaataggcattttctcatgatt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12633 aagtcattagtcttttgtggatcaatatgtttgtatcccaataggcattttctcatgatt 12574
Query: 562 tctgactttgttccatttcgaagtatctcctccttctctataattttttgggcttctaga 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12573 tctgactttgttccatttcgaagtatctcctccttctctataattttttgggcttctaga 12514
Query: 622 gcattgatccaaattgaagcaggaggattgtttgatggagtcgcagcagcctggtattct 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12513 gcattgatccaaattgaagcaggaggattgtttgatggagtcgcagcagcctggtattct 12454
Query: 682 ggctgggcgttggcttcatcagtacccgttatctcttcttcttcaagcacttctacttca 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12453 ggctgggcgttggcttcatcagtacccgttatctcttcttcttcaagcacttctacttca 12394
Query: 742 ccagaacaattacaaattaagtcgtgggtattgggataaagtggacaaattaatggtaaa 801
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12393 ccagaacaattacaaattaagtcgtgggtatt-ggataaagtggacaaattaatggtaaa 12335
Query: 802 caagtccttcaactcttcctgctgaaaagaatcatcatca-tttttgattgatctggggc 860
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||
Sbjct: 12334 caagtccttcaactcttcctgctgaaaaagatcatcatcattttttgattgatctgtggc 12275
Query: 861 actgttcaagaactttttag-aagcgctattttcat 895
||||| |||||||||||||| |||||||||||||||
Sbjct: 12274 actgtccaagaactttttagaaagcgctattttcat 12239
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8852
Number of Sequences: 1807
Number of extensions: 8852
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)