BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF11FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1160 1360 0.0
>3x_Contig1160
Length = 7036
Score = 1360 bits (686), Expect = 0.0
Identities = 722/733 (98%), Gaps = 1/733 (0%)
Strand = Plus / Minus
Query: 85 tctggaacttttcctgttaacgtcacattccatctcttgttgcatcaaagactgttcgta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3112 tctggaacttttcctgttaacgtcacattccatctcttgttgcatcaaagactgttcgta 3053
Query: 145 cttcttcatgtactgatctaatttaatttgcttcttttctattatttgttgagcgctcca 204
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3052 cttcttcatgtactgatctaatttcatttgcttcttttctattatttgttgagcgctcca 2993
Query: 205 ttccaaatt-cctggttcaaaccattttgcttccttatcacgttgaaatcgaaaccccaa 263
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2992 ttccaaatgacctggttcaaaccattttgcttccttttcacgttgaaatcgaaaccccaa 2933
Query: 264 taacatattaccgttgataagttcttttaagagaaataaagttcttttccaattataaac 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2932 taacatattaccgttgataagttcttttaagagaaataaagttcttttccaattataaac 2873
Query: 324 gagcctgtggtattttattttacaatgcacccttttatgatacatgtagggaaattgata 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2872 gagcctgtggtattttattttacaatgcacccttttatgatacatgtagggaaattgata 2813
Query: 384 taaagggaaacgtgccaaagagttgcgcttctcataatcaatgggtaaatcataggaagc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2812 taaagggaaacgtgccaaagagttgcgcttctcataatcaatgggtaaatcataggaagc 2753
Query: 444 tgctttagaagctggtaaaaaagttttcgttaacatgatatccaattgtctattctcaat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2752 tgctttagaagctggtaaaaaagttttcgttaacatgatatccaattgtctattctcaat 2693
Query: 504 ctggtttgtcaacctatctaattgttgaccgagagcttttgttacttcccaattatcagg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2692 ctggtttgtcaacctatctaattgttgaccgagagcttttgttacttcccaattatcagg 2633
Query: 564 taattgcacaattttctcgacacaccctggtattaaagattcacagaaatactctatttt 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2632 taattgcacaattttctcgacacaccctggtattaaagattcacagaaatactctatttc 2573
Query: 624 atttttattaaagtctttgctgatattaccgatataaagaacgttttgatgataactgga 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2572 atttttattaaagtctttgctgatattaccgatataaagaacgttttgatgataactgga 2513
Query: 684 tgcttcaattgatcctgttagaactttatttctttcggagacatagtacttcaaattccg 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 2512 tgcttcaattgatcctgttagaactttatttctttcggagacatagtacttcaattcccg 2453
Query: 744 aagcaatacgtgatgaaaaaaacacaccancaaaaccgcttaaatcagattgaaaaccaa 803
||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||
Sbjct: 2452 aagcaatacgtgatgaaaaaaacacaccaacaaaaccgctaaaatcagatgaaaaaccaa 2393
Query: 804 acgattactgtga 816
|||||||||||||
Sbjct: 2392 acgattactgtga 2380
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8571
Number of Sequences: 1807
Number of extensions: 8571
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)