BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF11RM1.SCF screened BAC_end
(808 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1228 394 e-109
>3x_Contig1228
Length = 5992
Score = 394 bits (199), Expect = e-109
Identities = 202/203 (99%)
Strand = Plus / Plus
Query: 47 tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 580
Query: 107 gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 640
Query: 167 aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 700
Query: 227 gtattgcacgataaccatccact 249
||||||||||| |||||||||||
Sbjct: 701 gtattgcacgaaaaccatccact 723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,001
Number of Sequences: 1807
Number of extensions: 34001
Number of successful extensions: 2963
Number of sequences better than 1.0e-20: 1
length of query: 808
length of database: 10,358,551
effective HSP length: 16
effective length of query: 792
effective length of database: 10,329,639
effective search space: 8181074088
effective search space used: 8181074088
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)