BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF12FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1500 767 0.0
>3x_Contig1500
Length = 9720
Score = 767 bits (387), Expect = 0.0
Identities = 472/491 (96%), Gaps = 8/491 (1%)
Strand = Plus / Minus
Query: 457 ccgtccactgggtggaacgcatgcgacgcatatggagtggtaaccaaccatttgtgatga 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9720 ccgtccactgggtggaacgcatgcgacgcatatggagtggtaaccaaccatttgtgatga 9661
Query: 517 ggcttgtgcaaagccctgtaaactctaggccagtgcaaccatctatgaaccaaataaatc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9660 ggcttgtgcaaagccctgtaaactctaggccagtgcaaccatctatgaaccaaataaatc 9601
Query: 577 aaacaatcggtgaacatgatgaaagagatcacttcaaacgcaagttgacgaattccagcc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9600 aaacaatcggtgaacatgatgaaagagatcacttcaaacgcaagttgacgaattccagcc 9541
Query: 637 catgatttataatcgatatcgaggtaaagcttcgaatatccgttcaattcgaacaagaac 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9540 catgatttataatcgatatcgaggtaaagcttcgaatatccgttcaattcgaacaagaac 9481
Query: 697 catggtatagtcaacagaaccatcactgggatggcactgaatgcctgtttcatttccaac 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9480 catggtatagtcaacagaaccatcactgggatggcactgaatgcctgtttcatttccaac 9421
Query: 757 gacatctggtatgctcaaantacggngatgattngaaacagccttatcaaaaacgaaaag 816
|||||||||| | ||||| |||| ||||||| |||||||||||||||||||||||||
Sbjct: 9420 gacatctggt-tcttcaaataacggggatgattgaaaacagccttatcaaaaacgaaaag 9362
Query: 817 gtacgacatcgtagcgacactgaagtacaaag-ccatccaaaaa-tgtcatcaagac-aa 873
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||
Sbjct: 9361 gtacgacatcgtagcgacactgaagtacaaagcccatccaaaaattgtcatcaagacaaa 9302
Query: 874 catcgntagcgtttct-taaac-aattattacgaaggaaaattgattgg-acgt-ttatc 929
||||| |||||||||| ||||| |||||| |||| |||||||||||||| |||| | |||
Sbjct: 9301 catcgttagcgtttctctaaacaaattataacgagggaaaattgattggaacgtataatc 9242
Query: 930 agtgaattcca 940
|||||||||||
Sbjct: 9241 agtgaattcca 9231
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6650
Number of Sequences: 1807
Number of extensions: 6650
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)