BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZF12RM1.SCF screened BAC_end
(990 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1627 1239 0.0
>3x_Contig1627
Length = 15708
Score = 1239 bits (625), Expect = 0.0
Identities = 721/742 (97%), Gaps = 10/742 (1%)
Strand = Plus / Minus
Query: 47 gtgctaattgtttgaattgagagtctcccagcacaaaattttctctcaaagtctgctcat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 gtgctaattgtttgaattgagagtctcccagcacaaaattttctctcaaagtctgctcat 2384
Query: 107 cgttcaattcagtgaaaacactggaacgactgaaatcgtcagctatggcttgcattgtaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 cgttcaattcagtgaaaacactggaacgactgaaatcgtcagctatggcttgcattgtaa 2324
Query: 167 taggatgcgtatataaattggataaatcttcctcgtttcaatttatgacaaatttagtcc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2323 taggatgcgtatataaattggataaatcttcctcgtttcaatttatgacaaatttagtcc 2264
Query: 227 aaagttgattcaagtagatgctaaatcctgattgtatattatgacttctttcttcttctt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2263 aaagttgattcaagtagatgctaaatcctgattgtatattatgacttctttcttcttctt 2204
Query: 287 taactgtacccttttgccactcaaggctctaattgtttaagttcatataatctcagaatg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2203 taactgtacccttttgccactcaaggctctaattgtttaagttcatataatctcagaatg 2144
Query: 347 aaagttgtaattcgggtttgatatcaacgattgtatgggactgtcaaatgtgtagggtaa 406
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2143 aaggttgtaattcgggtttgatatcaacgattgtatgggactgtcaaatgtgtagggtaa 2084
Query: 407 cgatacatcatccgtacattctctaaagtatccagaattccaaattcatggtgtacggat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 cgatacatcatccgtacattctctaaagtatccagaattccaaattcatggtgtacggat 2024
Query: 467 ggttaaattaaaagtgtgtacatgatattattactatatagggttatttagtccgtgaga 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 ggttaaattaaaagtgtgtacatgatattattactatatagggttatttagtccgtgaga 1964
Query: 527 ctcataactcgctgtgcggtaagggcgatgagagacatcatctaatacgacaatataatt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 ctcataactcgctgtgcggtaagggcgatgagagacatcatctaatacgacaatataatt 1904
Query: 587 cccgtccttggtgatncatttgttctgctactgcgatctttgggcgacaacgcaactctt 646
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 cccgtccttggtgatcatttggttctgctactgcgatctttgggcgacaacgcaactctt 1844
Query: 647 ttttttttgttggagctttcgcctantgaaaaattcatgantatttcccaatggattgga 706
||||||| |||||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct: 1843 tttttttgtttggagctttcgcctagtgaaaaattcatga-taattcccaatgga-tgga 1786
Query: 707 agaaacagcttgaccctatggacttaagttacaggttttgattgtaggatttttttttat 766
|| |||||||||| |||| |||| ||||||||||| ||||| ||||||||||||||| ||
Sbjct: 1785 ag-aacagcttga-cctagggac-taagttacagg-tttga-tgtaggattttttttcat 1731
Query: 767 ttggagggtttttcaacattgg 788
| || ||||||||||||||||
Sbjct: 1730 t--ga-ggtttttcaacattgg 1712
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,651
Number of Sequences: 1807
Number of extensions: 16651
Number of successful extensions: 174
Number of sequences better than 1.0e-20: 1
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)