BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG01FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1477 0.0
>3x_Contig1761
Length = 23186
Score = 1477 bits (745), Expect = 0.0
Identities = 793/805 (98%), Gaps = 3/805 (0%)
Strand = Plus / Minus
Query: 89 aacgtctttcccattcctttttcaattcccatgccttcaacatgttgatcttgattctgt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10067 aacgtctttcccattcctttttcaattcccatgccttcaacatgttgatcttgattctgt 10008
Query: 149 taaagaagatttcggccagagataacccgagtatgacagcaaacacgtatgcaagtacga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10007 taaagaagatttcggccagagataacccgagtatgacagcaaacacgtatgcaagtacga 9948
Query: 209 atgtcatatctacaagcatcaacatatatattatcatggtagaacaaaaagtgatcaata 268
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9947 atgtcatagcaacaagcatcaacatatatattatcatggtagaacaaaaagtgatcaata 9888
Query: 269 accgtacaaaatcatggaagaaatcaacccagtctggggcgaaaacgttgaacatgaatt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9887 accgtacaaaatcatggaagaaatcaacccagtctggggcgaaaacgttgaacatgaatt 9828
Query: 329 tgccgaaactagttggcaagaattgcctttgtaattccagatcttcgatagtatataaca 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9827 tgccgaaactagttggcaagaattgcctttgtaattccagatcttcgatagtatataaca 9768
Query: 389 cgttcttacctgtagcctcatcgttctcagcttcctcattgactcctgccttcttgaacc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9767 cgttcttacctgtagcctcatcgttctcagcttcctcattgactcctgccttcttgaacc 9708
Query: 449 atttcaattctaggtaccagctcacaaataacaagaatttgtatacaaaggcagcaacaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9707 atttcaattctaggtaccagctcacaaataacaagaatttgtatacaaaggcagcaacaa 9648
Query: 509 cgataagcaagaagataccaaatgcttcaccgcgatcagaagcatagagtttctcaaaga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9647 cgataagcaagaagataccaaatgcttcaccgcgatcagaagcatagagtttctcaaaga 9588
Query: 569 caacgggatagttcatatattttcttgtgagataagagttcattccagtcatttcggaac 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9587 caacgggatagttcatatattttcttgtgagataagagttcattccagtcatttcggaac 9528
Query: 629 caccatccatgtccattccagacatagaactggaagtactagtactcatggccatggcac 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9527 caccatccatgtccattccagacatagaactggaagtactagtactcatggccatggcac 9468
Query: 689 tggctgaggtggtagtatcacctgcgtgcatattcatgttgaaaggctttattgatatct 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9467 tggctgaggtggtagtatcacctgcgtgcatattcatgttgaaaggctttattgatatct 9408
Query: 749 gtcgatgggggtttttggatagtgtcggttgtgggctcttttgattaacccaacccaact 808
|||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 9407 gtcgat-ggggtttttggatagtgtcggttgt-ggctcttttgattaacccaagccaact 9350
Query: 809 gtgcaggtattttttttcttcgtcaatcgcttcccaatacgtgaatgacccaagagttta 868
|||||| || || ||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct: 9349 gtgcagtta-ttcttttcttcgtcaatcgcttcccaatacgtgaatgaacaaagagttaa 9291
Query: 869 aattaacaaaaaaacatcaatgttt 893
||| |||||||||||||||||||||
Sbjct: 9290 aatcaacaaaaaaacatcaatgttt 9266
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7245
Number of Sequences: 1807
Number of extensions: 7245
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)