BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG02FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1062 1594 0.0
>3x_Contig1062
Length = 5564
Score = 1594 bits (804), Expect = 0.0
Identities = 816/819 (99%), Gaps = 1/819 (0%)
Strand = Plus / Minus
Query: 88 tactattgtactaagaggtgcaanccgaacaagtattagacgaagctgaaagatctctac 147
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4042 tactattgtactaagaggtgcaa-ccgaacaagtattagacgaagctgaaagatctctac 3984
Query: 148 atgatgctttatctgtcctttcacaaacaacaaaagaaaccagaactgttttgggtggtg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3983 atgatgctttatctgtcctttcacaaacaacaaaagaaaccagaactgttttgggtggtg 3924
Query: 208 gttgtgccgaaatgattatgtcaaaagctgttgacacagtagggcaaaatgttgaaggta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3923 gttgtgccgaaatgattatgtcaaaagctgttgacacagtagggcaaaatgttgaaggta 3864
Query: 268 agaaagcacttgctgtagaatcttttgcaaaagccctaagacaattgcctactattcttg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3863 agaaagcacttgctgtagaatcttttgcaaaagccctaagacaattgcctactattcttg 3804
Query: 328 cggacaacgctggtttcgatagtagtgaattgatcacaaagttaagatcttcgatttaca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3803 cggacaacgctggtttcgatagtagtgaattgatcacaaagttaagatcttcgatttaca 3744
Query: 388 acggcatgagtacatcaggtttggatttggataacggcaccattgctgacatgagagaac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3743 acggcatgagtacatcaggtttggatttggataacggcaccattgctgacatgagagaac 3684
Query: 448 tagggatcgtggaaagttataaattgaaaagagctgtagtaacctcagccagcgaagcag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3683 tagggatcgtggaaagttataaattgaaaagagctgtagtaacctcagccagcgaagcag 3624
Query: 508 ccgaagtcctcttgagagtggataatattatcagggctaaaccaagaacagccgatagac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3623 ccgaagtcctcttgagagtggataatattatcagggctaaaccaagaacagccgatagac 3564
Query: 568 agcacggtcatatgtaaattaattaaattagtactaagcaatcaccacaaacgtttaaat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3563 agcacggtcatatgtaaattaattaaattagtactaagcaatcaccacaaacgtttaaat 3504
Query: 628 ttcgttctaatatccaaaaagttaagctaagaagtgaattatcattatacatgaaacaac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3503 ttcgttctaatatccaaaaagttaagctaagaagtgaattatcattatacatgaaacaac 3444
Query: 688 gtagttcaaaatttactccagaaagtatatagggtaggtcaataacctcagtaaagagat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3443 gtagttcaaaatttactccagaaagtatatagggtaggtcaataacctcagtaaagagat 3384
Query: 748 tgcacctctatcttcaaattatgcagttccgacttctttgttttcaggtactcctccaac 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3383 tgcacctctatcttcaaattatgcagttccgacttctttgttttcaggtactcctccaac 3324
Query: 808 atttgtacttgctgctcaatactctctatatcatccctcaaaccttcaacatcaacgctt 867
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3323 atttgtacttgctgctcaatactctctatatcatccctcaaacctccaacatcaacgctt 3264
Query: 868 tctgaagaagtattgnaattattgacaaggttttttttg 906
||||||||||||||| |||||||||||||||||||||||
Sbjct: 3263 tctgaagaagtattggaattattgacaaggttttttttg 3225
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6434
Number of Sequences: 1807
Number of extensions: 6434
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)