BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG02RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1235 1201 0.0
>3x_Contig1235
Length = 6673
Score = 1201 bits (606), Expect = 0.0
Identities = 727/757 (96%), Gaps = 9/757 (1%)
Strand = Plus / Plus
Query: 109 gtagaggtcttgctttgcaatggg-catcagcagataaagaggaagaaacacaggggcaa 167
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagaggtcttgctttgcaatggggcatcagcagataaagaggaagaaacacaggggcaa 60
Query: 168 aaaaagaaaaacaaaaaaaatgtatgaaatgattttacgatataaagggatgagctgtgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaaagaaaaacaaaaaaaatgtatgaaatgattttacgatataaagggatgagctgtgt 120
Query: 228 ttccagttggttgttgtatcggtgctattgtgttaggagtgtctcattacacctcattta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttccagttggttgttgtatcggtgctattgtgttaggagtgtctcattacacctcattta 180
Query: 288 cgctaacaattcctcaagatatttgctattcaatagtgaactttttcacatacgtaacaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgctaacaattcctcaagatatttgctattcaatagtgaactttttcacatacgtaacaa 240
Query: 348 gacattgcaaaaaggggacaggatggttacaaacagggcgttgacatatgtcaactcttc 407
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gacattgcaaaagggggacaggatggttacaaacagggcgttgacatatgtcaactcttc 300
Query: 408 tactccattgaagatcattgaaaatgaaattgacttggataattgctacggagataaaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tactccattgaagatcattgaaaatgaaattgacttggataattgctacggagataaaga 360
Query: 468 aattgtagttaaagttcacgcagctgctttcaatccaattgactttatacttcacgactt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattgtagttaaagttcacgcagctgctttcaatccaattgactttatacttcacgactt 420
Query: 528 tgcaaacaaatggctcgttggttcaaaaccaaagactattggtagagattattcgggaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgcaaacaaatggctcgttggttcaaaaccaaagactattggtagagattattcgggaga 480
Query: 588 aattgtgaaagtaggcgagaaagttgataaagaatgggctgttggcgacaaaagttgtgg 647
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 481 aattgtgaaggtaggcgagaaagttgataaagaatgggctgttggcgacaaagtttgtgg 540
Query: 648 gttggttgatgctgtttataatgagcaaagtgctatgagagattaccctagtgtttgatt 707
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 541 gttgtttgatgctgtttataatgagcaaggtgctatgagagatta-cctagtgtttgatc 599
Query: 708 cagaaaagctcaggaactaattgtttgacaaagcttcccgaattccttgacgcacagcat 767
||| |||||||| ||||||| | |||||||||||||| ||||||| |||||||||||||
Sbjct: 600 cag-aaagctcaagaactaaattgttgacaaagcttccggaattccatgacgcacagcat 658
Query: 768 agtgattatgttttaaggggcctgcttggcccttaatggtttccccctaccattcaggga 827
||||||||| ||||| || |||||||||||||| | |||| || ||||||||||||||
Sbjct: 659 agtgattatctttta--ggtgctgcttggcccttagt-gtttaccactaccattcaggga 715
Query: 828 tttacccgatt-tgggcaaaaattcgggcccggattc 863
|| | |||||| ||| ||||||||| |||||||||||
Sbjct: 716 ttca-ccgattatggtcaaaaattc-ggcccggattc 750
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7691
Number of Sequences: 1807
Number of extensions: 7691
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)