BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG03FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1526 0.0
>3x_Contig1755
Length = 22936
Score = 1526 bits (770), Expect = 0.0
Identities = 869/889 (97%), Gaps = 10/889 (1%)
Strand = Plus / Plus
Query: 88 aaaaagaaagatcccgggtaacacccttgacttagatgaaagtttaccaggctttctgcg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17379 aaaaagaaagatcccgggtaacacccttgacttagatgaaagtttaccaggctttctgcg 17438
Query: 148 aaccgtagcagcaagattagcttctgctggaggtatctggtttagagtgtgaaaaataca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17439 aaccgtagcagcaagattagcttctgctggaggtatctggtttagagtgtgaaaaataca 17498
Query: 208 cgccatttatttttacaaaggcaattcactgtctttcagtaatctaatcggtagcaaatg 267
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17499 cgccatttaccagtacaaaggcaattcactgtctttcagtaatctaatcggtagcaaatg 17558
Query: 268 tttggatgttgttttgttggaactgcaaatccaaaacgccaattgatttacacttagagt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17559 tttggatgttgttttgttggaactgcaaatccaaaacgccaattgatttacacttagagt 17618
Query: 328 tctgatcttaggttttgtactcctcctccgtataattcagtagactttttaaccgtgaac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17619 tctgatcttaggttttgtactcctcctccgtataattcagtagactttttaaccgtgaac 17678
Query: 388 tggtatcgctatacatcggcacaaatttctacattcgacctgcaggctgtgaaatcaggc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17679 tggtatcgctatacatcggcacaaatttctacattcgacctgcaggctgtgaaatcaggc 17738
Query: 448 agaattaacttaacaactccattttttgtttgccccatgaatgatgaaagttttctaaaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17739 agaattaacttaacaactccattttttgtttgccccatgaatgatgaaagttttctaaaa 17798
Query: 508 aaacctgttatccctagggcgcggtacactaaacattcttaagtgttgttcaatcaaaac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17799 aaacctgttatccctagggcgcggtacactaaacattcttaagtgttgttcaatcaaaac 17858
Query: 568 aatacatcgatgtacattctgtagtttaccgtaaattctaacttcttgagttgtatttcg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17859 aatacatcgatgtacattctgtagtttaccgtaaattctaacttcttgagttgtatttcg 17918
Query: 628 ggggtttttgagatcgaaattgcttaaccttttctcaattggcataatctttatattgac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17919 ggggtttttgagatcgaaattgcttaaccttttctcaattggcataatctttatattgac 17978
Query: 688 acctgcttcacttctgagaaattcaatcctctgaccttcatgccctatgaggtagcttac 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17979 acctgcttcacttctgagaaattcaatcctctgaccttcatgccctatgaggtagcttac 18038
Query: 748 ttgcaaacgactcaagaccaaactttcctcggtgggagtcacattctcagcttctgtttc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18039 ttgcaaacgactcaagaccaaactttcctcggtgggagtcacattctcagcttctgtttc 18098
Query: 808 aatctggaaaatattatcagttttaccaggaatgcaactttc-aaaacattggtattgnt 866
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 18099 aatctggaaaatattatcagttttaccaggaatgcaactttcaaaaacattggtattgtt 18158
Query: 867 -gaatacaagttc-tgttcactgtagaaagc-tgta-attttcaaac-tatatcttgg-t 920
|||||||||| | ||||||||| ||||||| |||| || | ||||| |||||||||| |
Sbjct: 18159 ggaatacaagtccttgttcactgaagaaagcatgtatatatccaaacttatatcttggat 18218
Query: 921 ggaaccttct-aaagaattagattacttgaaa-ct-cacatttgatctt 966
|||||||||| ||||||||||||||| ||||| || |||||||||||||
Sbjct: 18219 ggaaccttctaaaagaattagattacctgaaatctccacatttgatctt 18267
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6951
Number of Sequences: 1807
Number of extensions: 6951
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)