BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG03RM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1192 1271 0.0
>3x_Contig1192
Length = 5015
Score = 1271 bits (641), Expect = 0.0
Identities = 698/709 (98%), Gaps = 6/709 (0%)
Strand = Plus / Plus
Query: 48 taatgaccgttcctgtacatcaacatctacagttttaatataattatcagcagtcttttc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3311 taatgaccgttcctgtacatcaacatctacagttttaatataattatcagcagtcttttc 3370
Query: 108 ttctccttccatatctacatagaacaattcagcgtcgttcgctgaactgtttgattccga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3371 ttctccttccatatctacatagaacaattcagcgtcgttcgctgaactgtttgattccga 3430
Query: 168 atctccattttcagaaaccacattatcagatcgtatcttgacagttgtgtttttacttgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3431 atctccattttcagaaaccacattatcagatcgtatcttgacagttgtgtttttacttgg 3490
Query: 228 aatttcctgagtatcaacgtcttgttgttcatcttcaccatcttgctcttcctccctcag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3491 aatttcctgagtatcaacgtcttgttgttcatcttcaccatcttgctcttcctccctcag 3550
Query: 288 ggatacgctttgcgaggagttgtaaccgtcagagtttggctcgtcaaaatgttgattctt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3551 ggatacgctttgcgaggagttgtaaccgtcagagtttggctcgtcaaaatgttgattctt 3610
Query: 348 tttcaccaattttaatattaggtcatgagaaggatcatagagttcttttgctttgataaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3611 tttcaccaattttaatattaggtcatgagaaggatcatagagttcttttgctttgataaa 3670
Query: 408 ctccacgggacgttttcttgatggcaacctgccagtatcgagttcatcagcttccgtcaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3671 ctccacgggacgttttcttgatggcaacctgccagtatcgagttcatcagcttccgtcaa 3730
Query: 468 tcttccaggcctaaatccaccagatcttaatgaactcttttttgcagtggatccaaagta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3731 tcttccaggcctaaatccaccagatcttaatgaactcttttttgcagtggatccaaagta 3790
Query: 528 ataatcttcaacttgatgtggattcatcaagtcaccacctcctagtaacaactcggatct 587
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3791 ataatcttcaacttgatgtggattcatcaggtcaccacctcctagtaacaactcggatct 3850
Query: 588 attcctgttgatactggtacct-ccctatgattctttctttgccctgattcaccatgtgg 646
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 3851 attcctgttgatactggtacctcccctatgattctttctttgccttgattcaccatgtgg 3910
Query: 647 cttgggatttctttgctttttgacttcccaccancctctggcattattatggttatgcct 706
||| ||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 3911 ctt-ggatttc-ttgctttttgacttcccacca-cctctggcattataatgtttatgcct 3967
Query: 707 cttttgccattatcacgatgacctactgctttaaatttcctagcagctg 755
| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 3968 c-tttgccattatcacgatgacctactgcttcaaa-ttcctagcagctg 4014
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7376
Number of Sequences: 1807
Number of extensions: 7376
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)