BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG04RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1364 1489 0.0
>3x_Contig1364
Length = 7464
Score = 1489 bits (751), Expect = 0.0
Identities = 849/872 (97%), Gaps = 8/872 (0%)
Strand = Plus / Minus
Query: 47 tatttttctggaaaccgtaaaaccaatcacgtgaatgcatggaatatttgattgacagtt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3920 tatttttctggaaaccgtaaaaccaatcacgtgaatgcatggaatatttgattgacagtt 3861
Query: 107 tcctaaatgatttcaatcaaggaacatgagaaacgtatggaattccgttagatataacat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3860 tcctaaatgatttcaatcaaggaacatgagaaacgtatggaattccgttagatataacat 3801
Query: 167 agctgttggtgtccatagaacagtgcaaagcagggaaattaaattaataactggtgttag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 agctgttggtgtccatagaacagtgcaaagcagggaaattaaattaataactggtgttag 3741
Query: 227 gcattgctggtattttcttcttagctgttttcaattttcggtccatattttgaagcacaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3740 gcattgctggtattttcttcttagctgttttcaattttcggtccatattttgaagcacaa 3681
Query: 287 ttgccagcagattgtttgttaataaattgaaacgacatacggttagtgcgaatctcttgg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3680 ttgccagcagattgtttgttaataaattgaaacgacatacggttagtgcgaatctcttgg 3621
Query: 347 aaaaagacgttttatttacaggtttttgtttccaacaaaggttctttattggtctaactt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3620 aaaaagacgttttatttacaggtttttgtttccaacaaaggttctttattggtctaactt 3561
Query: 407 taaatttgaaattttggaagcattttactacctgtgctcattagttgacgtattgattct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3560 taaatttgaaattttggaagcattttactacctgtgctcattagttgacgtattgattct 3501
Query: 467 ggttggtttgggatttttttttgtttttatctgtcctgtacgtggttccgtcaggttgtt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3500 ggttggtttgggatttttttttgtttttatctgtcctgtacgtggttccgtcaggttgtt 3441
Query: 527 gtcttagatgaatcagttgttaaactaacacgtcgcggaatgttcacaactagagcggag 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 gtcttagatgaatcagttgttaaactaacacgtcgcggaatgttcacaactagagcggag 3381
Query: 587 caaaacaatatcaaggccactattgccgcttcctacgataagctatatangccaattagt 646
||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct: 3380 caaaacaatatcaaggccactattgccgcttcctacgataagctatatagccaatttagt 3321
Query: 647 tcggatgaattaagtgaaattggcaactataaaatatcgaaatttattcggngaagggtc 706
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 3320 tcggatgaattaagtgaaattggcaactataaaatatcgaaattta-tcggggaagggtc 3262
Query: 707 ttttgggtaagtgtacttagccccgcatagattgacccatcaaaaggtggtgttgaaaac 766
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3261 ttttggtaaagtgtacttagccacgcatagattgacccatcaaaaggtggtgttgaaaac 3202
Query: 767 ccgcaataaaagggacccctaatgt-gtacgagaagtgttttatcatcgtcagtttgatt 825
| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3201 cggcaataaaaggga-ccctaatgtggtacgagaagtgttttatcatcgtcagtttgatt 3143
Query: 826 tcccgtattttaaccaaactttatgaaggtcattcgnacctgaatctaaggtcctggatg 885
||||||| | ||||||||||||||||| |||| ||| | ||||||||| ||| ||||||
Sbjct: 3142 tcccgta-tataaccaaactttatgaa-gtca-tcgtaactgaatctagggt-ctggat- 3088
Query: 886 ggcccccgagtattgttctggtcatgaacttt 917
|| || ||||||||||||||||||||||||||
Sbjct: 3087 ggtcctcgagtattgttctggtcatgaacttt 3056
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7488
Number of Sequences: 1807
Number of extensions: 7488
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)