BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG05FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1039 852 0.0
3x_Contig910 317 2e-86
>3x_Contig1039
Length = 4866
Score = 852 bits (430), Expect = 0.0
Identities = 492/505 (97%), Gaps = 7/505 (1%)
Strand = Plus / Plus
Query: 409 gatgttatcaccttggaagctaccaacgaaaacttcagattgg-tctacgatgttaaggg 467
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 1 gatgttatcaccttggaagctaccaacgaaaacttcagattgggtctacgatgtta-ggg 59
Query: 468 tagattcgctgtccaccgtatcactgatgaagaagcttcctacaagttgg--ctaaggtc 525
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 60 tagattcgctgtccaccgtatcactgatgaagaagcttcctacaagtttgtgctaaggtc 119
Query: 526 aagaagg-ttcaactaggtaagaagggtattccatacgtcgttacccacgacggtagaac 584
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aagaagggttcaactaggtaagaagggtattccatacgtcgttacccacgacggtagaac 179
Query: 585 catcagatacccagacccaaacatcaaggttaacgacaccgttaaggttgatttggctac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 catcagatacccagacccaaacatcaaggttaacgacaccgttaaggttgatttggctac 239
Query: 645 tggtactatcaccgatttcatcaaattcgacactggtaagttggtttatgttaccggtgg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tggtactatcaccgatttcatcaaattcgacactggtaagttggtttatgttaccggtgg 299
Query: 705 tcgtaacttgggtagagttggtaccatcgtccacagagaaagacacgcaagtggtttcta 764
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct: 300 tcgtaacttgggtagagttggtaccatcgtccacagagaaagacacgaaggtggtttcga 359
Query: 765 tttggttcacatcaaggattctttgg-aaacactttcgtcaccagattgaacaacgtttt 823
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 360 tttggttcacatcaaggattctttggaaaacactttcgtcaccagattgaacaacgtttt 419
Query: 824 cgtcatcggtgaacccagtagaccatggatctccttgccaaa-ggtaagggtatcaagtt 882
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 420 cgtcatcggtgaaccaggtagaccatggatctccttgccaaagggtaagggtatcaagtt 479
Query: 883 gaccatctctgaagaacgtgaccgt 907
|||||||||||||||||||||||||
Sbjct: 480 gaccatctctgaagaacgtgaccgt 504
>3x_Contig910
Length = 3140
Score = 317 bits (160), Expect = 2e-86
Identities = 190/196 (96%), Gaps = 3/196 (1%)
Strand = Plus / Plus
Query: 83 ttcccatgctgcacacctatgaagcaacgatttactaacattgtattttttgtcactaca 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2948 ttcccatgctgcacacctatgaagcaacgatttactaacattgtattttttgtcactaca 3007
Query: 143 aaaaaattttaataacagaaagaagcatctaaagagattagcatgctccacatcattgga 202
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3008 aaaaaattttaataacagaaagaagcatctaaagagattagca-gctccacatcattgga 3066
Query: 203 tgttggacaagttgtccggttgttacgcaccaagaccatctgctggtccacacaagttgc 262
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3067 tgttggacaagttgtccggttgttacgcaccaagaccatctgc-aaaccacacaagttgc 3125
Query: 263 gtgaatccttgccatt 278
||| ||||||||||||
Sbjct: 3126 gtg-atccttgccatt 3140
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5884
Number of Sequences: 1807
Number of extensions: 5884
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 2
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)