BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG05RM1.SCF screened BAC_end
(804 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1671 601 e-172
>3x_Contig1671
Length = 12265
Score = 601 bits (303), Expect = e-172
Identities = 337/346 (97%), Gaps = 2/346 (0%)
Strand = Plus / Minus
Query: 50 aagcttccccatgggttcagcaaaggttctcaacatgaagctgttgagagggcaaaatta 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4171 aagcttccccatgggttcagcaaaggttctcaacatgaagctgttgagagggcaaaatta 4112
Query: 110 gcattaagtgagcgattattggtgagtagagaggattttgatgatggtaactacacacaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4111 gcattaagtgagcgattattggtgagtagagaggattttgatgatggtaactacacacaa 4052
Query: 170 ttcgatttgacaatggatcaagtcgagatttcggtttccttaagtaaatggataaacggg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4051 ttcgatttgacaatggatcaagtcgagatttcggtttccttaagtaaatggataaacggg 3992
Query: 230 aaaggatttctagatgaagtcactattaatgggctacgtggtgttgttgacagaactcac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3991 aaaggatttctagatgaagtcactattaatgggctacgtggtgttgttgacagaactcac 3932
Query: 290 gtttttttnaaaagaaaatgatgacgctaaggactatttaaacgttcatcaaccttgtga 349
| |||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct: 3931 g-ttttttggaaagaaaatgatgacgctaggaactatttaaacgttcatcaacctggtga 3873
Query: 350 tttcgaaatctcaaaagttgtcatgaacgatgtttttgttcacatt 395
||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 3872 tttcgaaatctcaaagtttgtcatgaacgatg-ttttgttcacatt 3828
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,396
Number of Sequences: 1807
Number of extensions: 11396
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 804
length of database: 10,358,551
effective HSP length: 16
effective length of query: 788
effective length of database: 10,329,639
effective search space: 8139755532
effective search space used: 8139755532
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)