BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG06FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1734 1570 0.0
>3x_Contig1734
Length = 17938
Score = 1570 bits (792), Expect = 0.0
Identities = 860/872 (98%), Gaps = 8/872 (0%)
Strand = Plus / Plus
Query: 86 taactgattggataattcagtgaaagtttgtcgttttgtgtgttagtttgtgcgtacgtg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5550 taactgattggataattcagtgaaagtttgtcgttttgtgtgttagtttgtgcgtacgtg 5609
Query: 146 tctccttctgtcggcttctctcaacaagtcccgttgtctgaccagtatcacatatttata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5610 tctccttctgtcggcttctctcaacaagtcccgttgtctgaccagtatcacatatttata 5669
Query: 206 gggtctttcttttgcatggattagtaacccatatcaggtaacccatacagctagctatat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 gggtctttcttttgcatggattagtaacccatatcaggtaacccatacagctagctatat 5729
Query: 266 tcaataatggaaaacaaacatatctcgcacgtctctcagattgaaagacgtgctactcct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 tcaataatggaaaacaaacatatctcgcacgtctctcagattgaaagacgtgctactcct 5789
Query: 326 ttgaacattcgtccagcttcgccttataccttaaatcctactgtggaaaaagacggttta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5790 ttgaacattcgtccagcttcgccttataccttaaatcctactgtggaaaaagacggttta 5849
Query: 386 tcatggcctagtattggtgctcgtgaaagagcagaggaaacggatgaagaagaacaaaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5850 tcatggcctagtattggtgctcgtgaaagagcagaggaaacggatgaagaagaacaaaaa 5909
Query: 446 cgggttggtcgtattgcagatgcggttaagactattttgagtgagctcggtgaggatacc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5910 cgggttggtcgtattgcagatgcggttaagactattttgagtgagctcggtgaggatacc 5969
Query: 506 gaacgtgagggtttactggatacccctacacggtacgctaaagcgatgttgtatttcact 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5970 gaacgtgagggtttactggatacccctacacggtacgctaaagcgatgttgtatttcact 6029
Query: 566 aaaggctatcaggataatatcatgaacgatgtgattaagaatgctgtgttcgaggaagat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6030 aaaggctatcaggataatatcatgaacgatgtgattaagaatgctgtgttcgaggaagat 6089
Query: 626 catgacgagatggttattgttcgtgacattgagatcttctctttgtgcgagcatcatttg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6090 catgacgagatggttattgttcgtgacattgagatcttctctttgtgcgagcatcatttg 6149
Query: 686 gtgccatttttcggtaaagttcatattggatacattcctaataag-aggtgttgggttta 744
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6150 gtgccatttttcggtaaagttcatattggatacattcctaataagaaggtgttgggttta 6209
Query: 745 tcgaaattggctcgtttagcagagatgtacgctagacgtttccaagtacaagaacgttta 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6210 tcgaaattggctcgtttagcagagatgtacgctagacgtttccaagtacaagaacgttta 6269
Query: 805 acgaagcaaattgctatgggctttgagtgatatcttgaaaccctaga-gtgtcgctgtgg 863
||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 6270 acgaagcaaattgctat-ggctttgagtgatatcttgaaa-cctagaggtgtcgctgtgg 6327
Query: 864 tcatcgaggctactcatatgtgtatggggtctcgtggggttc-aaaaactggttcttcc- 921
||||||||||||||||||||||||||| ||||||||| || | ||||||||||||||||
Sbjct: 6328 tcatcgaggctactcatatgtgtatggtgtctcgtggtgtccaaaaaactggttcttcca 6387
Query: 922 ctgtcac-tcttgtatgtgggga-acttgcga 951
||||||| |||||||||| |||| ||||||||
Sbjct: 6388 ctgtcacttcttgtatgttgggatacttgcga 6419
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5570
Number of Sequences: 1807
Number of extensions: 5570
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)