BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG06RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1595 1338 0.0
>3x_Contig1595
Length = 10795
Score = 1338 bits (675), Expect = 0.0
Identities = 714/725 (98%), Gaps = 2/725 (0%)
Strand = Plus / Plus
Query: 46 aaacataatatcattatcaaacatccatcacctcttatcccgaagactattttatctctt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5703 aaacataatatcattatcaaacatccatcacctcttatcccgaagactattttatctctt 5762
Query: 106 tatttggtttttgtaacttccgctaaactacatacacagattaaataaaataactatgga 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5763 tatttggtttttgtaacttccgctaaactacatacacagattaaataaaataactatgga 5822
Query: 166 accatacgtgtcacgctattcaagttgccctgtttctaactccgagcaacttggaagagc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5823 accatacgtgtcacgctattcaagttgccctgtttctaactccgagcaacttggaagagc 5882
Query: 226 ctgctgactgtagtatcgaatggacgttttgttctttttgtgcaggtgttgttatttgct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5883 ctgctgactgtagtatcgaatggacgttttgttctttttgtgcaggtgttgttatttgct 5942
Query: 286 gtcgcgcgtcaacgcctggaaactgtgcgcttgaaataaactcacatttaccattaatac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5943 gtcgcgcgtcaacgcctggaaactgtgcgcttgaaataaactcacatttaccattaatac 6002
Query: 346 actcaaagcgacatgtcacaaaagtgattgagaagcacatacttatccctccttccgaat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6003 actcaaagcgacatgtcacaaaagtgattgagaagcacatacttatccctccttccgaat 6062
Query: 406 ttcatcaaaatagaagtaattggagcttactttactacacatacctcgttaagatctaac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6063 ttcatcaaaatagaagtaattggagcttactttactacacatacctcgttaagatctaac 6122
Query: 466 aatttagagacagtgacagattcattgcataccggataaaagagttaaactaacatggaa 525
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6123 aatttagagacagtgacagattcattgcataccggaaaaaagagttaaactaacatggaa 6182
Query: 526 gagccagatgaagtagatgagtatagttactctgagttggaccgtncacagtaccctaca 585
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6183 gagccagatgaagtagatgagtatagttactctgagttggaccgtccacagtaccctaca 6242
Query: 586 ccaaaagttatagattcgaaaaagatctatgaacggctaaagagtaaagtacagttttgg 645
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6243 ccaaaggttatagattcgaaaaagatctatgaacggctaaagagtaaagtacagttttgg 6302
Query: 646 aaacatcaggatgtagaccgatcctctttc-atacgatggataggagacaaca-gagctc 703
|||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||
Sbjct: 6303 aaacatcaggatgtagacggatcctctttcaatacgatggataagagacaacaggagctc 6362
Query: 704 tggnaattgataggagatagtcccttggaattcaatcaaaataacggggctcccgaatca 763
||| |||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 6363 tggaaattgataagagatagtcccttgaaattcaatcaaaataacggtgctcccgaatca 6422
Query: 764 aaaga 768
|||||
Sbjct: 6423 aaaga 6427
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6639
Number of Sequences: 1807
Number of extensions: 6639
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)