BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG07FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1141 1443 0.0
>3x_Contig1141
Length = 5795
Score = 1443 bits (728), Expect = 0.0
Identities = 814/834 (97%), Gaps = 7/834 (0%)
Strand = Plus / Minus
Query: 94 gatcaattacggtgtaacggtgttcttgaaggaataagaattgctagggatggttatccc 153
||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct: 5795 gatcaattacggtgtaacggtgt-cttga-ggaataagaattgctagggatg-ttatccc 5739
Query: 154 aacagaatattcttcaaggaatttttccaaagatacaaaattctttcagatgagtgtaga 213
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5738 aacagaatattcttcaaggaatttt-ccaaagatacaaaattctttcagatgagtgtaga 5680
Query: 214 ttcatttttt-ctccaaaaagaactgtgaaatactgttatcatcacttcacctggatcca 272
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5679 ttcactaacaactccaaaaagaactgtgaaatactgttatcatcacttcacctggatcca 5620
Query: 273 acaatttacaaggtcgggaacacaaagctgtttttcaaagctggtgtattagcaaacctt 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5619 acaatttacaaggtcgggaacacaaagctgtttttcaaagctggtgtattagcaaacctt 5560
Query: 333 gaactgctgaaagaacagcgtttgagtgcagctgttactaggttaaatgctataatatct 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5559 gaactgctgaaagaacagcgtttgagtgcagctgttactaggttaaatgctataatatct 5500
Query: 393 gctaattcagtcaggaaagaaatcagaagtcatcttaagaaattacaggctgcaaggatc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5499 gctaattcagtcaggaaagaaatcagaagtcatcttaagaaattacaggctgcaaggatc 5440
Query: 453 ttaaaggtaacttttgaaacctatgacaggctcatggaaaatccatggtacaatttatac 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439 ttaaaggtaacttttgaaacctatgacaggctcatggaaaatccatggtacaatttatac 5380
Query: 513 atgaaattgctaccgcttttagactcttcgaataccatcttgaaaactaaaaaaatagct 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5379 atgaaattgctaccgcttttagactcttcgaataccatcttgaaaactaaaaaaatagct 5320
Query: 573 gaacaagtcaaacaactcgaaaacaagctagcagagagcgaaaaaagtacgacggttatg 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5319 gaacaagtcaaacaactcgaaaacaagctagcagagagcgaaaaaagtacgacggttatg 5260
Query: 633 gtagatgcaaagaggctggtggaacaagagttagaaaaagttaaagcattattgttaaaa 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5259 gtagatgcaaagaggctggtggaacaagagttagaaaaagttaaagcattattgttaaaa 5200
Query: 693 gaaactagtgaactacaacagtcgcaagaacttcttgaggctaccaagacaaagcaaatt 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5199 gaaactagtgaactacaacagtcgcaagaacttcttgaggctaccaagacaaagcaaatt 5140
Query: 753 caaattcaacaaaaatgggatgaaactctgtcaattaaagactctttggaaactgaaaac 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5139 caaattcaacaaaaatgggatgaaactctgtcaattaaagactctttggaaactgaaaac 5080
Query: 813 cttgtattatctaaagaagctgataatttacgcctttgtattagaanagacgaaaaatgc 872
|| | ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct: 5079 ctcgaattatctaaagaagctgataatttacgcc-ttgaattagaaaagacgaaaaatgc 5021
Query: 873 ttccgatttatcaggaagataatttaaaanagttgtcccatgataaagaaaagc 926
||||||||||||| |||||||| || | | ||||||||||||||||||||||||
Sbjct: 5020 ttccgatttatca-gaagataagtttagagagttgtcccatgataaagaaaagc 4968
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7600
Number of Sequences: 1807
Number of extensions: 7600
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)