BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZG07RM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1792                                                        1191   0.0  

>3x_Contig1792 
          Length = 28468

 Score = 1191 bits (601), Expect = 0.0
 Identities = 650/662 (98%), Gaps = 4/662 (0%)
 Strand = Plus / Plus

                                                                         
Query: 48    ttgagtgaaatattcaacatgctggtaagaaggtgcgccagcgattaaggccatctttct 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15735 ttgagtgaaatattcaacatgctggtaagaaggtgcgccagcgattaaggccatctttct 15794

                                                                         
Query: 108   aatgaagataggcaacagcatcattaacacggccaacgcgatggttggagccaaactggt 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15795 aatgaagataggcaacagcatcattaacacggccaacgcgatggttggagccaaactggt 15854

                                                                         
Query: 168   tatgataccaagcaattgatctggcatgttgtagataaatttcaaccatggtaatttgtt 227
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15855 tatgataccaagcaattgatctggcatgttgtagataaatttcaaccatggtaatttgtt 15914

                                                                         
Query: 228   agtcaagtaggtgatattggagaccataccgacaaatgcaacggggaaagcccacaagat 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15915 agtcaagtaggtgatattggagaccataccgacaaatgcaacggggaaagcccacaagat 15974

                                                                         
Query: 288   gaccaaggcaacaatggcagcaatactaccgaattttctaaccaatctttccaaccagaa 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15975 gaccaaggcaacaatggcagcaatactaccgaattttctaaccaatctttccaaccagaa 16034

                                                                         
Query: 348   cattctcaagttgaaccattgaacgtctgtaggcgagataccgacgtacgctggagtcaa 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16035 cattctcaagttgaaccattgaacgtctgtaggcgagataccgacgtacgctggagtcaa 16094

                                                                         
Query: 408   tgacaatggtgaatggtgactaaccatttggaccgctttctgagcatcgtactgagtatt 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16095 tgacaatggtgaatggtgactaaccatttggaccgctttctgagcatcgtactgagtatt 16154

                                                                         
Query: 468   gaattcgacaaagacggaattcattggtttttcttccatatgtttgttttgcaactcttg 527
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16155 gaattcgacaaagacggaattcattggtttttcttccatatgtttgttttgcaactcttg 16214

                                                                         
Query: 528   aatctttgcatttagttcanngcacttctcctttgcatagttgatagtatccactttctt 587
             |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 16215 aatctttgcatttagttcaggcaacttctcctttgcatagttgatagtatccactttctt 16274

                                                                         
Query: 588   a-caataacaggtttcaccctatgagaangtcttttcttctctggcacgtattgagtaat 646
             | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 16275 accaataacaggtttcaacctatgagaaggtcttttcttctctggcacgtattgagtaat 16334

                                                                         
Query: 647   atcgttagcaatcttaccttggatcggcaccaccctttctttttctttttctttgctaat 706
             |||||||||||||||| ||||||||||||||| |||||||| ||| ||||| ||||||||
Sbjct: 16335 atcgttagcaatctta-cttggatcggcacca-cctttcttcttc-ttttccttgctaat 16391

               
Query: 707   gg 708
             ||
Sbjct: 16392 gg 16393


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8481
Number of Sequences: 1807
Number of extensions: 8481
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)