BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG08FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig967 1441 0.0
>3x_Contig967
Length = 3110
Score = 1441 bits (727), Expect = 0.0
Identities = 758/766 (98%), Gaps = 2/766 (0%)
Strand = Plus / Minus
Query: 86 tctccgctgtgaatgatgtcgataatgcaacttggtctgattgcttccaggttcttcatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 tctccgctgtgaatgatgtcgataatgcaacttggtctgattgcttccaggttcttcatg 1293
Query: 146 agttctctagcggtacctctaaacgcttccggggcataagaacactcggttgaaaagtag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 agttctctagcggtacctctaaacgcttccggggcataagaacactcggttgaaaagtag 1233
Query: 206 tctaatttcttatagtgggcatacaagacaatttccttttggtatgaatacttgaacggc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 tctaatttcttatagtgggcatacaagacaatttccttttggtatgaatacttgaacggc 1173
Query: 266 ttcgacctcttgatcggtgacccactactctgagtaagaatggatgttgatttttccagc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 ttcgacctcttgatcggtgacccactactctgagtaagaatggatgttgatttttccagc 1113
Query: 326 ctggcaacatcaccacgtaaaatgttcatcaagacggtttccgccatatcatccgcatta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 ctggcaacatcaccacgtaaaatgttcatcaagacggtttccgccatatcatccgcatta 1053
Query: 386 tgaccagtaactacatgtttgattcctagcttggcagctcctctgtctagagcttgtcgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 tgaccagtaactacatgtttgattcctagcttggcagctcctctgtctagagcttgtcgc 993
Query: 446 ctgaagactccgcaataggtacaactgtttcttatgccagcgcatgctacgatctcatcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 ctgaagactccgcaataggtacaactgtttcttatgccagcgcatgctacgatctcatcc 933
Query: 506 attgtccaattgtacaaatctttataagatactatttccaacggaaggtcatactgtact 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 attgtccaattgtacaaatctttataagatactatttccaacggaaggtcatactgtact 873
Query: 566 tgatttctcttcactgtagctaacgaatcgtctctatatccgacaataccctcatcaata 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 tgatttctcttcactgtagctaacgaatcgtctctatatccgacaataccctcatcaata 813
Query: 626 ctcaaaagaacaatctcaactccataatcatggcgatcattcaaaagctttaaaacgtat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ctcaaaagaacaatctcaactccataatcatggcgatcattcaaaagctttaaaacgtat 753
Query: 686 gctaagaccgtggaatctttacctccagaagcaccgactgcaatacgttcgcctcggtga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gctaagaccgtggaatctttacctccagaagcaccgactgcaatacgttcgcctcggtga 693
Query: 746 aaaaagttgtttgatacattggtgttatgtatttctgcctcg-atacaganaag-aacac 803
|||| ||||||||||||| |||||||||||||||||| |||| ||||||| ||| |||||
Sbjct: 692 aaaaggttgtttgatacaatggtgttatgtatttctgtctcgaatacagagaagaaacac 633
Query: 804 tctttacagatccgttggtaattcttcggtcttttcatcactgcct 849
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 632 tctttacagatccgttgtaaattcttcggtcttttcatcactgcct 587
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5201
Number of Sequences: 1807
Number of extensions: 5201
Number of successful extensions: 23
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)