BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG08RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1044 1483 0.0
>3x_Contig1044
Length = 4552
Score = 1483 bits (748), Expect = 0.0
Identities = 786/796 (98%), Gaps = 2/796 (0%)
Strand = Plus / Plus
Query: 48 tttctttgccatctctttttctgtatgaactggtttaccaattttctttttggctgggtt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 tttctttgccatctctttttctgtatgaactggtttaccaattttctttttggctgggtt 2919
Query: 108 ggcccttattctcaacggcgaatcttgatcagtagatgaaccaggctctttcttgaccgc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 ggcccttattctcaacggcgaatcttgatcagtagatgaaccaggctctttcttgaccgc 2979
Query: 168 attggtatgtgcattatgaggactgagcatgtatttcgataagatattttttttggaatc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 attggtatgtgcattatgaggactgagcatgtatttcgataagatattttttttggaatc 3039
Query: 228 actatcaatggctgtagaagtgggaacgttttctgtcttttgctttaaaggtgggcggct 287
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3040 actatcaatggctgtagaagtgggaaagttttctgtcttttgctttaaaggtgggcggct 3099
Query: 288 attgtttggctgattattttgagcagatttatctgacgttccaccagaagaccaacaaga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 attgtttggctgattattttgagcagatttatctgacgttccaccagaagaccaacaaga 3159
Query: 348 tgactctgtggtagaacctggctcttttttaactaatgacatagttttaaaagtgcacac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160 tgactctgtggtagaacctggctcttttttaactaatgacatagttttaaaagtgcacac 3219
Query: 408 ttgctggtaggttgtctttcttctgtgcgtaccttcgtttccaaacttgtgcagttatct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3220 ttgctggtaggttgtctttcttctgtgcgtaccttcgtttccaaacttgtgcagttatct 3279
Query: 468 tgcttgtacaagggaaatcatagaataccctcaatgcttttttaaatgcgtaataatgaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3280 tgcttgtacaagggaaatcatagaataccctcaatgcttttttaaatgcgtaataatgaa 3339
Query: 528 acaagtgagaagtagcaatgactagattactggggaagggttgatcagaaggtgactgaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3340 acaagtgagaagtagcaatgactagattactggggaagggttgatcagaaggtgactgaa 3399
Query: 588 tgttagaccaattgagggtacgggcacgatatcatctcacttcgatttgtttaaaccgtc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3400 tgttagaccaattgagggtacgggcacgatatcatctcacttcgatttgtttaaaccgtc 3459
Query: 648 agtaagaaagatgctggatacggatgaatagaaaaaaatgatattgcatctaagtcatag 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3460 agtaagaaagatgctggatacggatgaatagaaaaaaatgatattgcatctaagtcatag 3519
Query: 708 agaagaaaaatgcgctcttgtagcatctttatgcctttgtggcgcaatcggtagcgcgtg 767
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 3520 agaagaaaaatgcgctcttgtagcatcttaatgccttgttggcgcaatcggtagcgcgtg 3579
Query: 768 tgacttttaatcacaaagtttgggggttccgagccccccacaaggcttaattttttccct 827
||||| |||||||| ||| ||||||||| ||||||||||||| ||||| |||||||||||
Sbjct: 3580 tgactcttaatcac-aaggttgggggtt-cgagccccccacagggctttattttttccct 3637
Query: 828 atctcccttctcaatc 843
||||||||||||||||
Sbjct: 3638 atctcccttctcaatc 3653
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6888
Number of Sequences: 1807
Number of extensions: 6888
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)