BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG09FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig843 813 0.0
3x_Contig1330 622 e-178
>3x_Contig843
Length = 3365
Score = 813 bits (410), Expect = 0.0
Identities = 410/410 (100%)
Strand = Plus / Plus
Query: 86 acgctatgaaagtggcccaaatttatcaaccaggtgatatcatctgggttcatgattact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2956 acgctatgaaagtggcccaaatttatcaaccaggtgatatcatctgggttcatgattact 3015
Query: 146 acttgatgttgcttcctcaattattaagaatgagattcaacaatgcaaccattgcatact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3016 acttgatgttgcttcctcaattattaagaatgagattcaacaatgcaaccattgcatact 3075
Query: 206 tccatgatactccttggccatcaaacgaatatttcagatgtctttccaggaggaagcctg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3076 tccatgatactccttggccatcaaacgaatatttcagatgtctttccaggaggaagcctg 3135
Query: 266 tcctggacggtctcttaggctccaacagaatttgtttccaaaacgacggtttcgctagac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3136 tcctggacggtctcttaggctccaacagaatttgtttccaaaacgacggtttcgctagac 3195
Query: 326 attttgtttccagttgtcaaaggcttttgggttgtactgcaacgaaatctagcaattcaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3196 attttgtttccagttgtcaaaggcttttgggttgtactgcaacgaaatctagcaattcaa 3255
Query: 386 acgctaataactcagacgagtatcggataacgtcttatggtggtgacgttttggttgact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3256 acgctaataactcagacgagtatcggataacgtcttatggtggtgacgttttggttgact 3315
Query: 446 ctttgcctatcggtgttgatacggagcaaatacaaagggatgcgttctct 495
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3316 ctttgcctatcggtgttgatacggagcaaatacaaagggatgcgttctct 3365
>3x_Contig1330
Length = 7703
Score = 622 bits (314), Expect = e-178
Identities = 385/401 (96%), Gaps = 6/401 (1%)
Strand = Plus / Minus
Query: 575 atactgtcaaaggtgttttacaaaagctacaggcgtaccaggnattcctagctatgtatc 634
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7703 atactgtcaaaggtgttttacaaaagctacaggcgtaccaggtattcctagctatgtatc 7644
Query: 635 cggaatggcggggtaaagtggttttgattcaagtcagtggtccaacagctaaaaccgatg 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7643 cggaatggcggggtaaagtggttttgattcaagtcagtggtccaacagctaaaaccgatg 7584
Query: 695 caaatataaaacttgagtctcaagttaacgaattggtgtcgtccataaacggtgaantat 754
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7583 caaatataaaacttgagtctcaagttaacgaattggtgtcgtccataaacggtgaa-tat 7525
Query: 755 ggtaa-ttgaactatagtcctgtccagcattattacctgagaatttccc-agattgttat 812
||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct: 7524 ggtaatttgaactatagtcctgtccagcattattacctgagaattccccaagatgtttat 7465
Query: 813 tactccttgctaagagtagctgatgtttgtttgattaccagtgttagagatggtatgaaa 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7464 tactccttgctaagagtagctgatgtttgtttgattaccagtgttagagatggtatg-aa 7406
Query: 873 tac-actgcatttggatttgtcacagtttaatcacaactatccaaatattattggtacgc 931
||| |||||||| | ||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct: 7405 tacaactgcattggaatttgtcacagttaaatcacaactatccaaatataattgttacgc 7346
Query: 932 atcaccattgattttgagtgag-tttcttgtacttctacga 971
|||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 7345 atcaccattgattttgagtgagttttctggtacttctacga 7305
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6299
Number of Sequences: 1807
Number of extensions: 6299
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)